CRAN Package Check Results for Package emax.glm

Last updated on 2020-04-09 09:48:09 CEST.

Check Details

Version: 0.1.2
Check: examples
Result: ERROR
    Running examples in 'emax.glm-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: plot.em.glm.summary
    > ### Title: Error bar plot of coefficients and errors to inspect class
    > ### overlap.
    > ### Aliases: plot.em.glm.summary
    >
    > ### ** Examples
    >
    > x <- model.matrix(~ factor(wool) + factor(tension), warpbreaks)
    > y <- warpbreaks$breaks
    >
    > m <- em.glm(x = x, y = y, K = 2, b.init = "random")
    > m.sum <- summary(m)
    >
    > plot(m.sum)
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Error in plot.window(...) : need finite 'ylim' values
    Calls: plot ... plot2 -> plot -> plot.default -> localWindow -> plot.window
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.1.2
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘AER’ ‘pROC’ ‘pander’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.2
Check: examples
Result: ERROR
    Running examples in ‘emax.glm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot.em.glm.summary
    > ### Title: Error bar plot of coefficients and errors to inspect class
    > ### overlap.
    > ### Aliases: plot.em.glm.summary
    >
    > ### ** Examples
    >
    > x <- model.matrix(~ factor(wool) + factor(tension), warpbreaks)
    > y <- warpbreaks$breaks
    >
    > m <- em.glm(x = x, y = y, K = 2, b.init = "random")
    > m.sum <- summary(m)
    >
    > plot(m.sum)
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Error in plot.window(...) : need finite 'ylim' values
    Calls: plot ... plot2 -> plot -> plot.default -> localWindow -> plot.window
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-osx-x86_64, r-patched-solaris-x86

Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘em.glm_vignette.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'em.glm_vignette.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘em.glm_vignette.Rmd’
    
    --- re-building ‘predicted-value.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'predicted-value.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘predicted-value.Rmd’
    
    --- re-building ‘residual-theory.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'residual-theory.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘residual-theory.Rmd’
    
    --- re-building ‘warm_up_vignette.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'warm_up_vignette.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘warm_up_vignette.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘em.glm_vignette.Rmd’ ‘predicted-value.Rmd’ ‘residual-theory.Rmd’
     ‘warm_up_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64