CRAN Package Check Results for Package pla

Last updated on 2020-04-09 09:48:20 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2 8.99 47.58 56.57 ERROR
r-devel-linux-x86_64-debian-gcc 0.2 6.73 37.45 44.18 ERROR
r-devel-linux-x86_64-fedora-clang 0.2 68.56 ERROR
r-devel-linux-x86_64-fedora-gcc 0.2 73.79 ERROR
r-devel-windows-ix86+x86_64 0.2 19.00 78.00 97.00 ERROR
r-devel-windows-ix86+x86_64-gcc8 0.2 17.00 61.00 78.00 ERROR
r-patched-linux-x86_64 0.2 8.17 47.94 56.11 ERROR
r-patched-osx-x86_64 0.2 ERROR
r-patched-solaris-x86 0.2 96.10 ERROR
r-release-linux-x86_64 0.2 7.00 47.22 54.22 OK
r-release-windows-ix86+x86_64 0.2 15.00 93.00 108.00 OK
r-release-osx-x86_64 0.2 OK
r-oldrel-windows-ix86+x86_64 0.2 11.00 56.00 67.00 OK
r-oldrel-osx-x86_64 0.2 OK

Check Details

Version: 0.2
Check: examples
Result: ERROR
    Running examples in 'pla-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: AgarDiffusionAssay
    > ### Title: Antibiotic agar diffusion assay using a rectangular tray
    > ### Aliases: AgarDiffusionAssay
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > data(AgarDiffusionAssay); Agar <- AgarDiffusionAssay
    > Agar <- read.table(paste(system.file(package = "pla"),
    + "vignettes/PhEur/data/AntibioticAgarDiffusionAssay.txt",
    + sep = "/"), header = TRUE)
    > select <- c("Row", "Column", "Sample", "Dilution", "Response")
    > PHframe <- data2assayFrame(Agar[, select])
    Warning in data2assayFrame(Agar[, select]) : NAs introduced by coercion
    > plaModel <- pla(Agar, design = "lsd",
    + assayTitle = "PhEur: Antibiotic agar diffusion assay")
    Warning in data2assayFrame(data[, select], dr = dilutionRatio, design = design) :
     NAs introduced by coercion
    Error in if ((indexOfReference == 1) & (indexOfReference != iOR)) indexOfReference <- iOR :
     argument is of length zero
    Calls: pla
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.2
Check: examples
Result: ERROR
    Running examples in ‘pla-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: AgarDiffusionAssay
    > ### Title: Antibiotic agar diffusion assay using a rectangular tray
    > ### Aliases: AgarDiffusionAssay
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > data(AgarDiffusionAssay); Agar <- AgarDiffusionAssay
    > Agar <- read.table(paste(system.file(package = "pla"),
    + "vignettes/PhEur/data/AntibioticAgarDiffusionAssay.txt",
    + sep = "/"), header = TRUE)
    > select <- c("Row", "Column", "Sample", "Dilution", "Response")
    > PHframe <- data2assayFrame(Agar[, select])
    Warning in data2assayFrame(Agar[, select]) : NAs introduced by coercion
    > plaModel <- pla(Agar, design = "lsd",
    + assayTitle = "PhEur: Antibiotic agar diffusion assay")
    Warning in data2assayFrame(data[, select], dr = dilutionRatio, design = design) :
     NAs introduced by coercion
    Error in if ((indexOfReference == 1) & (indexOfReference != iOR)) indexOfReference <- iOR :
     argument is of length zero
    Calls: pla
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-osx-x86_64, r-patched-solaris-x86