Last updated on 2020-04-09 09:48:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1 | 2.63 | 22.44 | 25.07 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1 | 2.09 | 18.06 | 20.15 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1 | 31.77 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1 | 31.46 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.1 | 6.00 | 46.00 | 52.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.1 | 5.00 | 33.00 | 38.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1 | 2.33 | 22.01 | 24.34 | ERROR | |
| r-patched-osx-x86_64 | 0.1 | ERROR | ||||
| r-patched-solaris-x86 | 0.1 | 47.60 | ERROR | |||
| r-release-linux-x86_64 | 0.1 | 1.97 | 24.37 | 26.34 | NOTE | |
| r-release-windows-ix86+x86_64 | 0.1 | 4.00 | 47.00 | 51.00 | NOTE | |
| r-release-osx-x86_64 | 0.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1 | 3.00 | 36.00 | 39.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.1 | NOTE |
Version: 0.1
Check: R code for possible problems
Result: NOTE
UQnormalize.count: no visible binding for global variable 'quantile'
plotNScores: no visible global function definition for 'par'
plotNScores: no visible global function definition for 'hist'
plotNScores: no visible global function definition for 'title'
plotScores: no visible global function definition for 'par'
plotScores: no visible global function definition for 'hist'
plotScores: no visible global function definition for 'title'
sgRSEA: no visible binding for global variable 'sd'
sgRSEA: no visible global function definition for 'p.adjust'
sgRSEA.mean: no visible binding for global variable 'sd'
sgRSEA.mean: no visible global function definition for 'p.adjust'
Undefined global functions or variables:
hist p.adjust par quantile sd title
Consider adding
importFrom("graphics", "hist", "par", "title")
importFrom("stats", "p.adjust", "quantile", "sd")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.1
Check: examples
Result: ERROR
Running examples in 'sgRSEA-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sgRSEA
> ### Title: Perform a permutation test which computes gene scores and their
> ### significance
> ### Aliases: sgRSEA
>
> ### ** Examples
>
> data(melanoma808)
> dat = UQnormalize(melanoma808, trt=c('PLX7_R1','PLX7_R2'), ctrl=c('D7_R1','D7_R2'))
> results = sgRSEA(dat=dat, multiplier=30)
Error in sum(ifelse(zj >= 0, zj, 0)) :
invalid 'type' (character) of argument
Calls: sgRSEA ... Tmaxmean.Null.Tss2 -> T.maxmean -> tapply -> lapply -> FUN
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64
Version: 0.1
Check: examples
Result: ERROR
Running examples in ‘sgRSEA-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sgRSEA
> ### Title: Perform a permutation test which computes gene scores and their
> ### significance
> ### Aliases: sgRSEA
>
> ### ** Examples
>
> data(melanoma808)
> dat = UQnormalize(melanoma808, trt=c('PLX7_R1','PLX7_R2'), ctrl=c('D7_R1','D7_R2'))
> results = sgRSEA(dat=dat, multiplier=30)
Error in sum(ifelse(zj < 0, zj, 0)) :
invalid 'type' (character) of argument
Calls: sgRSEA ... Tmaxmean.Null.Tss2 -> T.maxmean -> tapply -> lapply -> FUN
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1
Check: examples
Result: ERROR
Running examples in ‘sgRSEA-Ex.R’ failed
The error most likely occurred in:
> ### Name: sgRSEA
> ### Title: Perform a permutation test which computes gene scores and their
> ### significance
> ### Aliases: sgRSEA
>
> ### ** Examples
>
> data(melanoma808)
> dat = UQnormalize(melanoma808, trt=c('PLX7_R1','PLX7_R2'), ctrl=c('D7_R1','D7_R2'))
> results = sgRSEA(dat=dat, multiplier=30)
Error in sum(ifelse(zj >= 0, zj, 0)) :
invalid 'type' (character) of argument
Calls: sgRSEA ... Tmaxmean.Null.Tss2 -> T.maxmean -> tapply -> lapply -> FUN
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-osx-x86_64, r-patched-solaris-x86