CRAN Package Check Results for Package survsup

Last updated on 2020-04-09 10:49:57 CEST.

Check Details

Version: 0.0.2
Check: examples
Result: ERROR
    Running examples in 'survsup-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: nar
    > ### Title: Add a numbers at risk table to a Kaplan-Meier plot
    > ### Aliases: nar
    >
    > ### ** Examples
    >
    > library(survsup); library(ggplot2); library(dplyr); library(survival)
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    >
    > retinopathy %>%
    + survfit(Surv(futime, status) ~ trt, data = .) %>%
    + plot_survfit() %>%
    + nar()
    Error in `$<-.data.frame`(`*tmp*`, "y", value = NA_real_) :
     replacement has 1 row, data has 0
    Calls: %>% ... withVisible -> <Anonymous> -> nar -> $<- -> $<-.data.frame
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'survsup_intro.Rmd' using rmarkdown
    Quitting from lines 92-96 (survsup_intro.Rmd)
    Error: processing vignette 'survsup_intro.Rmd' failed with diagnostics:
    replacement has 1 row, data has 0
    --- failed re-building 'survsup_intro.Rmd'
    
    SUMMARY: processing the following file failed:
     'survsup_intro.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-osx-x86_64, r-release-linux-x86_64

Version: 0.0.2
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘gridExtra’ ‘stats’ ‘survival’ ‘utils’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.0.2
Check: examples
Result: ERROR
    Running examples in ‘survsup-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: nar
    > ### Title: Add a numbers at risk table to a Kaplan-Meier plot
    > ### Aliases: nar
    >
    > ### ** Examples
    >
    > library(survsup); library(ggplot2); library(dplyr); library(survival)
    
    Attaching package: ‘dplyr’
    
    The following objects are masked from ‘package:stats’:
    
     filter, lag
    
    The following objects are masked from ‘package:base’:
    
     intersect, setdiff, setequal, union
    
    >
    > retinopathy %>%
    + survfit(Surv(futime, status) ~ trt, data = .) %>%
    + plot_survfit() %>%
    + nar()
    Error in `$<-.data.frame`(`*tmp*`, "y", value = NA_real_) :
     replacement has 1 row, data has 0
    Calls: %>% ... withVisible -> <Anonymous> -> nar -> $<- -> $<-.data.frame
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘survsup_intro.Rmd’ using rmarkdown
    Quitting from lines 92-96 (survsup_intro.Rmd)
    Error: processing vignette 'survsup_intro.Rmd' failed with diagnostics:
    replacement has 1 row, data has 0
    --- failed re-building ‘survsup_intro.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘survsup_intro.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64

Version: 0.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘survsup_intro.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 92-96 (survsup_intro.Rmd)
    Error: processing vignette 'survsup_intro.Rmd' failed with diagnostics:
    replacement has 1 row, data has 0
    --- failed re-building ‘survsup_intro.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘survsup_intro.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.0.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 92-96 (survsup_intro.Rmd)
    Error: processing vignette 'survsup_intro.Rmd' failed with diagnostics:
    replacement has 1 row, data has 0
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64