CRAN Package Check Results for Package themetagenomics

Last updated on 2020-04-09 09:48:30 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.0.0	37.01	334.35	371.36	ERROR
r-devel-linux-x86_64-debian-gcc	1.0.0	27.75	252.31	280.06	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.0			542.01	ERROR
r-devel-linux-x86_64-fedora-gcc	1.0.0			474.49	ERROR
r-devel-windows-ix86+x86_64	1.0.0	68.00	607.00	675.00	ERROR
r-devel-windows-ix86+x86_64-gcc8	1.0.0	74.00	433.00	507.00	ERROR
r-patched-linux-x86_64	1.0.0	34.90	326.88	361.78	ERROR
r-patched-osx-x86_64	1.0.0				ERROR
r-patched-solaris-x86	1.0.0			708.70	ERROR
r-release-linux-x86_64	1.0.0	32.66	312.48	345.14	OK
r-release-windows-ix86+x86_64	1.0.0	102.00	601.00	703.00	OK
r-release-osx-x86_64	1.0.0				OK
r-oldrel-windows-ix86+x86_64	1.0.0	94.00	585.00	679.00	OK
r-oldrel-osx-x86_64	1.0.0				OK

Check Details

Version: 1.0.0
Check: tests
Result: ERROR
     Running 'testthat.R' [31s/37s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     -- 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) -
     `prepare_data(...)` did not produce any warnings.

     -- 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     -- 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     == testthat results ===========================================================
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [24s/38s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     ── 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) ─
     `prepare_data(...)` did not produce any warnings.

     ── 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ── 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [40s/97s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     ── 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) ─
     `prepare_data(...)` did not produce any warnings.

     ── 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ── 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [39s/194s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     ── 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) ─
     `prepare_data(...)` did not produce any warnings.

     ── 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ── 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [41s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     -- 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) -
     `prepare_data(...)` did not produce any warnings.

     -- 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     -- 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     == testthat results ===========================================================
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0.0
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [39s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     -- 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) -
     `prepare_data(...)` did not produce any warnings.

     -- 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     -- 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     == testthat results ===========================================================
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0.0
Check: installed package size
Result: NOTE
     installed size is 5.0Mb
     sub-directories of 1Mb or more:
     doc 1.0Mb
     libs 2.2Mb
     references 1.1Mb
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 1.0.0
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [30s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     -- 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) -
     `prepare_data(...)` did not produce any warnings.

     -- 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     -- 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     == testthat results ===========================================================
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 1.0.0
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [29s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     -- 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) -
     `prepare_data(...)` did not produce any warnings.

     -- 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     -- 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     == testthat results ===========================================================
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [31s/36s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     ── 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) ─
     `prepare_data(...)` did not produce any warnings.

     ── 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ── 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [17s/27s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:

     ── 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘functional_prediction.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib

    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib

    Error: processing vignette 'functional_prediction.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘functional_prediction.Rmd’

    --- re-building ‘thematic_structure.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib

    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib

    Error: processing vignette 'thematic_structure.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘thematic_structure.Rmd’

    SUMMARY: processing the following files failed:
     ‘functional_prediction.Rmd’ ‘thematic_structure.Rmd’

    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [52s/72s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     ── 1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92) ─
     `prepare_data(...)` did not produce any warnings.

     ── 2. Error: prepare_data works with multiclass factor and continuous (@test-pre
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ── 3. Error: prepare_data works with multiclass factor and spline (@test-prepare
     undefined columns selected
     Backtrace:
     1. testthat::expect_equal(...)
     5. base::`[.data.frame`(x$modelframe, , c("Multi1", "Multi3", "Day"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 45 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 3 ]
     1. Failure: prepare_data works with multiclass factor (@test-prepare.R#92)
     2. Error: prepare_data works with multiclass factor and continuous (@test-prepare.R#139)
     3. Error: prepare_data works with multiclass factor and spline (@test-prepare.R#168)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86