Last updated on 2020-04-09 10:50:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.7 | 7.55 | 102.83 | 110.38 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.0.7 | 6.15 | 78.46 | 84.61 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.0.7 | 129.76 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.7 | 126.04 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.0.7 | 20.00 | 165.00 | 185.00 | WARN | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.0.7 | 19.00 | 114.00 | 133.00 | WARN | |
| r-patched-linux-x86_64 | 1.0.7 | 7.78 | 98.18 | 105.96 | WARN | |
| r-patched-osx-x86_64 | 1.0.7 | WARN | ||||
| r-patched-solaris-x86 | 1.0.7 | 178.20 | WARN | |||
| r-release-linux-x86_64 | 1.0.7 | 6.13 | 94.67 | 100.80 | WARN | |
| r-release-windows-ix86+x86_64 | 1.0.7 | 15.00 | 169.00 | 184.00 | WARN | |
| r-release-osx-x86_64 | 1.0.7 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.7 | 17.00 | 147.00 | 164.00 | WARN | |
| r-oldrel-osx-x86_64 | 1.0.7 | OK |
Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'sad_pkpd.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "ID"
Warning: position_dodge requires non-overlapping x intervals
Warning: position_dodge requires non-overlapping x intervals
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 172 row(s) containing missing values (geom_path).
Warning: Removed 468 rows containing missing values (geom_point).
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
Warning: Ignoring unknown parameters: shape
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
--- finished re-building 'sad_pkpd.Rmd'
--- re-building 'theoph.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Quitting from lines 131-142 (theoph.Rmd)
Error: processing vignette 'theoph.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building 'theoph.Rmd'
--- re-building 'xgxr_overview.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
removing points with MDV==1 & EVID==0 from dataset
--- finished re-building 'xgxr_overview.Rmd'
SUMMARY: processing the following file failed:
'theoph.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘sad_pkpd.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "ID"
Warning: position_dodge requires non-overlapping x intervals
Warning: position_dodge requires non-overlapping x intervals
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 172 row(s) containing missing values (geom_path).
Warning: Removed 468 rows containing missing values (geom_point).
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
Warning: Ignoring unknown parameters: shape
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
--- finished re-building ‘sad_pkpd.Rmd’
--- re-building ‘theoph.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Quitting from lines 131-142 (theoph.Rmd)
Error: processing vignette 'theoph.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘theoph.Rmd’
--- re-building ‘xgxr_overview.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
removing points with MDV==1 & EVID==0 from dataset
--- finished re-building ‘xgxr_overview.Rmd’
SUMMARY: processing the following file failed:
‘theoph.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64
Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘sad_pkpd.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "ID"
Warning: position_dodge requires non-overlapping x intervals
Warning: position_dodge requires non-overlapping x intervals
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 172 row(s) containing missing values (geom_path).
Warning: Removed 468 rows containing missing values (geom_point).
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
Warning: Ignoring unknown parameters: shape
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
Error: processing vignette 'sad_pkpd.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘sad_pkpd.Rmd’
--- re-building ‘theoph.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Quitting from lines 131-142 (theoph.Rmd)
Error: processing vignette 'theoph.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘theoph.Rmd’
--- re-building ‘xgxr_overview.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
removing points with MDV==1 & EVID==0 from dataset
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
Error: processing vignette 'xgxr_overview.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘xgxr_overview.Rmd’
SUMMARY: processing the following files failed:
‘sad_pkpd.Rmd’ ‘theoph.Rmd’ ‘xgxr_overview.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-osx-x86_64
Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘sad_pkpd.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "ID"
Warning: position_dodge requires non-overlapping x intervals
Warning: position_dodge requires non-overlapping x intervals
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 172 row(s) containing missing values (geom_path).
Warning: Removed 468 rows containing missing values (geom_point).
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
Warning: Ignoring unknown parameters: shape
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
--- finished re-building ‘sad_pkpd.Rmd’
--- re-building ‘theoph.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Quitting from lines 131-142 (theoph.Rmd)
Error: processing vignette 'theoph.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘theoph.Rmd’
--- re-building ‘xgxr_overview.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
removing points with MDV==1 & EVID==0 from dataset
--- finished re-building ‘xgxr_overview.Rmd’
SUMMARY: processing the following file failed:
‘theoph.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "ID"
Warning: position_dodge requires non-overlapping x intervals
Warning: position_dodge requires non-overlapping x intervals
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 172 row(s) containing missing values (geom_path).
Warning: Removed 468 rows containing missing values (geom_point).
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
Warning: Ignoring unknown parameters: shape
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Quitting from lines 131-142 (theoph.Rmd)
Error: processing vignette 'theoph.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64