CRAN Package Check Results for Package xgxr

Last updated on 2020-04-09 10:50:00 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.7 7.55 102.83 110.38 WARN
r-devel-linux-x86_64-debian-gcc 1.0.7 6.15 78.46 84.61 WARN
r-devel-linux-x86_64-fedora-clang 1.0.7 129.76 WARN
r-devel-linux-x86_64-fedora-gcc 1.0.7 126.04 WARN
r-devel-windows-ix86+x86_64 1.0.7 20.00 165.00 185.00 WARN
r-devel-windows-ix86+x86_64-gcc8 1.0.7 19.00 114.00 133.00 WARN
r-patched-linux-x86_64 1.0.7 7.78 98.18 105.96 WARN
r-patched-osx-x86_64 1.0.7 WARN
r-patched-solaris-x86 1.0.7 178.20 WARN
r-release-linux-x86_64 1.0.7 6.13 94.67 100.80 WARN
r-release-windows-ix86+x86_64 1.0.7 15.00 169.00 184.00 WARN
r-release-osx-x86_64 1.0.7 OK
r-oldrel-windows-ix86+x86_64 1.0.7 17.00 147.00 164.00 WARN
r-oldrel-osx-x86_64 1.0.7 OK

Check Details

Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'sad_pkpd.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "ID"
    Warning: position_dodge requires non-overlapping x intervals
    Warning: position_dodge requires non-overlapping x intervals
    `geom_smooth()` using formula 'y ~ x'
    `geom_smooth()` using formula 'y ~ x'
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 172 row(s) containing missing values (geom_path).
    Warning: Removed 468 rows containing missing values (geom_point).
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    Warning: Ignoring unknown parameters: shape
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    --- finished re-building 'sad_pkpd.Rmd'
    
    --- re-building 'theoph.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Quitting from lines 131-142 (theoph.Rmd)
    Error: processing vignette 'theoph.Rmd' failed with diagnostics:
    missing value where TRUE/FALSE needed
    --- failed re-building 'theoph.Rmd'
    
    --- re-building 'xgxr_overview.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    removing points with MDV==1 & EVID==0 from dataset
    --- finished re-building 'xgxr_overview.Rmd'
    
    SUMMARY: processing the following file failed:
     'theoph.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘sad_pkpd.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "ID"
    Warning: position_dodge requires non-overlapping x intervals
    Warning: position_dodge requires non-overlapping x intervals
    `geom_smooth()` using formula 'y ~ x'
    `geom_smooth()` using formula 'y ~ x'
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 172 row(s) containing missing values (geom_path).
    Warning: Removed 468 rows containing missing values (geom_point).
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    Warning: Ignoring unknown parameters: shape
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    --- finished re-building ‘sad_pkpd.Rmd’
    
    --- re-building ‘theoph.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Quitting from lines 131-142 (theoph.Rmd)
    Error: processing vignette 'theoph.Rmd' failed with diagnostics:
    missing value where TRUE/FALSE needed
    --- failed re-building ‘theoph.Rmd’
    
    --- re-building ‘xgxr_overview.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    removing points with MDV==1 & EVID==0 from dataset
    --- finished re-building ‘xgxr_overview.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘theoph.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64

Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘sad_pkpd.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "ID"
    Warning: position_dodge requires non-overlapping x intervals
    Warning: position_dodge requires non-overlapping x intervals
    `geom_smooth()` using formula 'y ~ x'
    `geom_smooth()` using formula 'y ~ x'
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 172 row(s) containing missing values (geom_path).
    Warning: Removed 468 rows containing missing values (geom_point).
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    Warning: Ignoring unknown parameters: shape
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'sad_pkpd.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘sad_pkpd.Rmd’
    
    --- re-building ‘theoph.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Quitting from lines 131-142 (theoph.Rmd)
    Error: processing vignette 'theoph.Rmd' failed with diagnostics:
    missing value where TRUE/FALSE needed
    --- failed re-building ‘theoph.Rmd’
    
    --- re-building ‘xgxr_overview.Rmd’ using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    removing points with MDV==1 & EVID==0 from dataset
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'xgxr_overview.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘xgxr_overview.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘sad_pkpd.Rmd’ ‘theoph.Rmd’ ‘xgxr_overview.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘sad_pkpd.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "ID"
    Warning: position_dodge requires non-overlapping x intervals
    Warning: position_dodge requires non-overlapping x intervals
    `geom_smooth()` using formula 'y ~ x'
    `geom_smooth()` using formula 'y ~ x'
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 172 row(s) containing missing values (geom_path).
    Warning: Removed 468 rows containing missing values (geom_point).
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    Warning: Ignoring unknown parameters: shape
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    --- finished re-building ‘sad_pkpd.Rmd’
    
    --- re-building ‘theoph.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Quitting from lines 131-142 (theoph.Rmd)
    Error: processing vignette 'theoph.Rmd' failed with diagnostics:
    missing value where TRUE/FALSE needed
    --- failed re-building ‘theoph.Rmd’
    
    --- re-building ‘xgxr_overview.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    removing points with MDV==1 & EVID==0 from dataset
    --- finished re-building ‘xgxr_overview.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘theoph.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.7
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "ID"
    Warning: position_dodge requires non-overlapping x intervals
    Warning: position_dodge requires non-overlapping x intervals
    `geom_smooth()` using formula 'y ~ x'
    `geom_smooth()` using formula 'y ~ x'
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning: Removed 468 rows containing non-finite values (stat_summary).
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning in self$trans$transform(x) : NaNs produced
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Removed 172 row(s) containing missing values (geom_path).
    Warning: Removed 468 rows containing missing values (geom_point).
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    geom_path: Each group consists of only one observation. Do you need to adjust
    the group aesthetic?
    Warning: Ignoring unknown parameters: shape
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    `geom_smooth()` using method = 'loess' and formula 'y ~ x'
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Warning: Transformation introduced infinite values in continuous y-axis
    Quitting from lines 131-142 (theoph.Rmd)
    Error: processing vignette 'theoph.Rmd' failed with diagnostics:
    missing value where TRUE/FALSE needed
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64