Last updated on 2020-04-11 09:49:55 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 5.23 | 60.59 | 65.82 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 4.62 | 48.33 | 52.95 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 86.96 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 88.17 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.2.1 | 12.00 | 61.00 | 73.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.2.1 | 12.00 | 64.00 | 76.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.1 | 5.48 | 59.60 | 65.08 | ERROR | |
| r-patched-osx-x86_64 | 0.2.1 | ERROR | ||||
| r-patched-solaris-x86 | 0.2.1 | 126.20 | ERROR | |||
| r-release-linux-x86_64 | 0.2.1 | 5.10 | 54.88 | 59.98 | ERROR | |
| r-release-windows-ix86+x86_64 | 0.2.1 | 10.00 | 101.00 | 111.00 | ERROR | |
| r-release-osx-x86_64 | 0.2.1 | FAIL | ||||
| r-oldrel-windows-ix86+x86_64 | 0.2.1 | 11.00 | 66.00 | 77.00 | ERROR | |
| r-oldrel-osx-x86_64 | 0.2.1 | OK |
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in 'geosample-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: discrete.inhibit.sample
> ### Title: Spatially discrete sampling
> ### Aliases: discrete.inhibit.sample
>
> ### ** Examples
>
> library("sf")
> set.seed(1234)
> x <- 0.015+0.03*(1:33)
> xall <- rep(x,33)
> yall <- c(t(matrix(xall,33,33)))
> xy <- cbind(xall,yall)+matrix(-0.0075+0.015*runif(33*33*2),33*33,2)
>
>
> # Convert to SF object
> xy <- xy %>%
+ as.data.frame %>%
+ sf::st_as_sf(coords = c(1,2))
>
>
> # Plot the points
> plot(st_geometry(xy),pch=19,cex=0.25,xlab="longitude",ylab="latitude",
+ cex.lab=1,cex.axis=1,cex.main=1, axes = TRUE)
>
>
> # Generate spatially random sample
> set.seed(15892)
> xy.sample1 <- xy[sample(1:dim(xy)[1],50,replace=FALSE),]
> plot(xy.sample1, pch = 19, col = 'black', add = TRUE)
>
>
> set.seed(15892)
> xy.sample2 <- discrete.inhibit.sample(obj=xy,size = 100,
+ delta = 0.08,plotit = TRUE)
> plot(st_geometry(xy),pch=19, cex = 0.25, col="black", add = TRUE)
>
>
> # Generate spatially inhibitory sample
> # with close pairs (cp.zeta criterion):
> set.seed(15892)
> xy.sample3 <- discrete.inhibit.sample(obj=xy, size = 100,delta = 0.065,
+ k = 25,cp.criterion = "cp.zeta",
+ zeta = 0.025, plotit = TRUE)
> plot(st_geometry(xy),pch=19, cex = 0.25, col="black", add = TRUE)
>
>
> # Generate spatially inhibitory sample
> # with close pairs (cp.neighb criterion):
> set.seed(15892)
> xy.sample4 <- discrete.inhibit.sample(obj=xy,size = 100,
+ delta = 0.065, k = 25,cp.criterion = "cp.neighb",
+ plotit = TRUE)
> plot(st_geometry(xy),pch=19, cex = 0.25, col="black", add = TRUE)
>
>
> # Generate spatially inhibitory sample
> # with close pairs (cp.zeta criterion):
> set.seed(15892)
> xy.sample5 <- discrete.inhibit.sample(obj=xy,size = 100,
+ delta = 0.065, cp.criterion = "cp.zeta",
+ zeta = 0.025, delta.fix = TRUE,
+ k = 25, plotit = TRUE)
> plot(st_geometry(xy),pch=19, cex = 0.25, col="black", add = TRUE)
>
>
> # Generate simple inhibitory sample from a regular grid
> library("PrevMap")
Loading required package: maxLik
Loading required package: miscTools
Please cite the 'maxLik' package as:
Henningsen, Arne and Toomet, Ott (2011). maxLik: A package for maximum likelihood estimation in R. Computational Statistics 26(3), 443-458. DOI 10.1007/s00180-010-0217-1.
If you have questions, suggestions, or comments regarding the 'maxLik' package, please use a forum or 'tracker' at maxLik's R-Forge site:
https://r-forge.r-project.org/projects/maxlik/
Loading required package: raster
Attaching package: 'raster'
The following object is masked from 'package:maxLik':
maxValue
Loading required package: pdist
Loading required package: Matrix
> data("sim.data")
> set.seed(15892)
> xy.sample6 <- discrete.inhibit.sample(obj = sim.data,
+ size = 50, delta = 0.08,plotit = TRUE)
OGR: Corrupt data
Error in CPL_area(x) : OGR error
Calls: discrete.inhibit.sample -> <Anonymous> -> st_area.sfc -> CPL_area
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'geosample-vignette.Rnw' using knitr
Loading required package: sf
Linking to GEOS 3.8.1, GDAL 3.0.4, PROJ 7.0.0
Loading required package: sp
Quitting from lines 269-276 (geosample-vignette.Rnw)
Error: processing vignette 'geosample-vignette.Rnw' failed with diagnostics:
OGR error
--- failed re-building 'geosample-vignette.Rnw'
SUMMARY: processing the following file failed:
'geosample-vignette.Rnw'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in ‘geosample-Ex.R’ failed
The error most likely occurred in:
> ### Name: discrete.inhibit.sample
> ### Title: Spatially discrete sampling
> ### Aliases: discrete.inhibit.sample
>
> ### ** Examples
>
> library("sf")
> set.seed(1234)
> x <- 0.015+0.03*(1:33)
> xall <- rep(x,33)
> yall <- c(t(matrix(xall,33,33)))
> xy <- cbind(xall,yall)+matrix(-0.0075+0.015*runif(33*33*2),33*33,2)
>
>
> # Convert to SF object
> xy <- xy %>%
+ as.data.frame %>%
+ sf::st_as_sf(coords = c(1,2))
>
>
> # Plot the points
> plot(st_geometry(xy),pch=19,cex=0.25,xlab="longitude",ylab="latitude",
+ cex.lab=1,cex.axis=1,cex.main=1, axes = TRUE)
>
>
> # Generate spatially random sample
> set.seed(15892)
> xy.sample1 <- xy[sample(1:dim(xy)[1],50,replace=FALSE),]
> plot(xy.sample1, pch = 19, col = 'black', add = TRUE)
>
>
> set.seed(15892)
> xy.sample2 <- discrete.inhibit.sample(obj=xy,size = 100,
+ delta = 0.08,plotit = TRUE)
> plot(st_geometry(xy),pch=19, cex = 0.25, col="black", add = TRUE)
>
>
> # Generate spatially inhibitory sample
> # with close pairs (cp.zeta criterion):
> set.seed(15892)
> xy.sample3 <- discrete.inhibit.sample(obj=xy, size = 100,delta = 0.065,
+ k = 25,cp.criterion = "cp.zeta",
+ zeta = 0.025, plotit = TRUE)
> plot(st_geometry(xy),pch=19, cex = 0.25, col="black", add = TRUE)
>
>
> # Generate spatially inhibitory sample
> # with close pairs (cp.neighb criterion):
> set.seed(15892)
> xy.sample4 <- discrete.inhibit.sample(obj=xy,size = 100,
+ delta = 0.065, k = 25,cp.criterion = "cp.neighb",
+ plotit = TRUE)
> plot(st_geometry(xy),pch=19, cex = 0.25, col="black", add = TRUE)
>
>
> # Generate spatially inhibitory sample
> # with close pairs (cp.zeta criterion):
> set.seed(15892)
> xy.sample5 <- discrete.inhibit.sample(obj=xy,size = 100,
+ delta = 0.065, cp.criterion = "cp.zeta",
+ zeta = 0.025, delta.fix = TRUE,
+ k = 25, plotit = TRUE)
> plot(st_geometry(xy),pch=19, cex = 0.25, col="black", add = TRUE)
>
>
> # Generate simple inhibitory sample from a regular grid
> library("PrevMap")
Loading required package: maxLik
Loading required package: miscTools
Please cite the 'maxLik' package as:
Henningsen, Arne and Toomet, Ott (2011). maxLik: A package for maximum likelihood estimation in R. Computational Statistics 26(3), 443-458. DOI 10.1007/s00180-010-0217-1.
If you have questions, suggestions, or comments regarding the 'maxLik' package, please use a forum or 'tracker' at maxLik's R-Forge site:
https://r-forge.r-project.org/projects/maxlik/
Loading required package: raster
Attaching package: ‘raster’
The following object is masked from ‘package:maxLik’:
maxValue
Loading required package: pdist
Loading required package: Matrix
> data("sim.data")
> set.seed(15892)
> xy.sample6 <- discrete.inhibit.sample(obj = sim.data,
+ size = 50, delta = 0.08,plotit = TRUE)
OGR: Corrupt data
Error in CPL_area(x) : OGR error
Calls: discrete.inhibit.sample -> <Anonymous> -> st_area.sfc -> CPL_area
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘geosample-vignette.Rnw’ using knitr
Loading required package: sf
Linking to GEOS 3.7.1, GDAL 2.3.2, PROJ 5.2.0
Loading required package: sp
Quitting from lines 269-276 (geosample-vignette.Rnw)
Error: processing vignette 'geosample-vignette.Rnw' failed with diagnostics:
OGR error
--- failed re-building ‘geosample-vignette.Rnw’
SUMMARY: processing the following file failed:
‘geosample-vignette.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'geosample-vignette.Rnw' using knitr
Loading required package: sf
Linking to GEOS 3.6.1, GDAL 2.2.3, PROJ 4.9.3
Loading required package: sp
Quitting from lines 269-276 (geosample-vignette.Rnw)
Error: processing vignette 'geosample-vignette.Rnw' failed with diagnostics:
OGR error
--- failed re-building 'geosample-vignette.Rnw'
SUMMARY: processing the following file failed:
'geosample-vignette.Rnw'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘geosample-vignette.Rnw’ using knitr
Loading required package: sf
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
Loading required package: sp
Quitting from lines 269-276 (geosample-vignette.Rnw)
Error: processing vignette 'geosample-vignette.Rnw' failed with diagnostics:
OGR error
--- failed re-building ‘geosample-vignette.Rnw’
SUMMARY: processing the following file failed:
‘geosample-vignette.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-osx-x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘geosample-vignette.Rnw’ using knitr
Loading required package: sf
Linking to GEOS 3.6.3, GDAL 2.2.4, PROJ 5.2.0
Loading required package: sp
Quitting from lines 269-276 (geosample-vignette.Rnw)
Error: processing vignette 'geosample-vignette.Rnw' failed with diagnostics:
OGR error
--- failed re-building ‘geosample-vignette.Rnw’
SUMMARY: processing the following file failed:
‘geosample-vignette.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.1
Check: examples
Result: FAIL
Flavor: r-release-osx-x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Loading required package: sf
Linking to GEOS 3.6.1, GDAL 2.2.3, PROJ 4.9.3
Loading required package: sp
Quitting from lines 269-276 (geosample-vignette.Rnw)
Error: processing vignette 'geosample-vignette.Rnw' failed with diagnostics:
OGR error
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64