CRAN Package Check Results for Package icd

Last updated on 2020-04-11 09:49:57 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.0.6 251.15 161.21 412.36 ERROR
r-devel-linux-x86_64-debian-gcc 4.0.6 166.03 133.44 299.47 ERROR
r-devel-linux-x86_64-fedora-clang 4.0.6 574.90 ERROR
r-devel-linux-x86_64-fedora-gcc 4.0.6 586.83 ERROR
r-devel-windows-ix86+x86_64 4.0.6 459.00 348.00 807.00 ERROR
r-devel-windows-ix86+x86_64-gcc8 4.0.6 478.00 241.00 719.00 ERROR
r-patched-linux-x86_64 4.0.6 214.96 160.39 375.35 ERROR
r-patched-osx-x86_64 4.0.6 ERROR
r-patched-solaris-x86 4.0.6 536.00 ERROR
r-release-linux-x86_64 4.0.6 207.24 149.75 356.99 WARN
r-release-windows-ix86+x86_64 4.0.6 474.00 290.00 764.00 WARN
r-release-osx-x86_64 4.0.6 NOTE
r-oldrel-windows-ix86+x86_64 4.0.6 621.00 307.00 928.00 NOTE
r-oldrel-osx-x86_64 4.0.6 NOTE

Check Details

Version: 4.0.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     'config' variable 'CPP' is deprecated
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-osx-x86_64, r-patched-solaris-x86

Version: 4.0.6
Check: Rd \usage sections
Result: WARN
    Documented arguments not in \usage in documentation object 'filter_valid':
     '...'
    
    Functions with \usage entries need to have the appropriate \alias
    entries, and all their arguments documented.
    The \usage entries must correspond to syntactically valid R code.
    See chapter 'Writing R documentation files' in the 'Writing R
    Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 4.0.6
Check: tests
Result: ERROR
     Running 'testthat.R' [38s/41s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     -- 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ---
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     == testthat results ===========================================================
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 4.0.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [32s/46s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     ── 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ───
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 4.0.6
Check: installed package size
Result: NOTE
     installed size is 13.2Mb
     sub-directories of 1Mb or more:
     R 1.8Mb
     data 1.4Mb
     libs 8.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 4.0.6
Check: data for non-ASCII characters
Result: NOTE
     Note: found 20 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 4.0.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [45s/58s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     ── 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ───
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 4.0.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [49s/159s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     ── 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ───
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 4.0.6
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [49s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     -- 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ---
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     == testthat results ===========================================================
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 4.0.6
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [49s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     -- 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ---
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     == testthat results ===========================================================
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 4.0.6
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [33s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     -- 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ---
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     == testthat results ===========================================================
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 4.0.6
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [37s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     -- 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ---
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     == testthat results ===========================================================
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 4.0.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [37s/41s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     ── 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ───
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 4.0.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RODBC’
Flavor: r-patched-osx-x86_64

Version: 4.0.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [24s/32s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     ── 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ───
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-osx-x86_64

Version: 4.0.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘CMS-HCC.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'CMS-HCC.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘CMS-HCC.Rmd’
    
    --- re-building ‘ICD-10.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'ICD-10.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘ICD-10.Rmd’
    
    --- re-building ‘PCCC.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'PCCC.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘PCCC.Rmd’
    
    --- re-building ‘charlson-scores.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'charlson-scores.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘charlson-scores.Rmd’
    
    --- re-building ‘compare-maps.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'compare-maps.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘compare-maps.Rmd’
    
    --- re-building ‘custom-maps.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'custom-maps.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘custom-maps.Rmd’
    
    --- re-building ‘introduction.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘introduction.Rmd’
    
    --- re-building ‘ranges.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'ranges.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘ranges.Rmd’
    
    --- re-building ‘country-lang-vers.Rnw’ using Sweave
    --- finished re-building ‘country-lang-vers.Rnw’
    
    --- re-building ‘efficiency.Rnw’ using Sweave
    --- finished re-building ‘efficiency.Rnw’
    
    SUMMARY: processing the following files failed:
     ‘CMS-HCC.Rmd’ ‘ICD-10.Rmd’ ‘PCCC.Rmd’ ‘charlson-scores.Rmd’
     ‘compare-maps.Rmd’ ‘custom-maps.Rmd’ ‘introduction.Rmd’ ‘ranges.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 4.0.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [66s/77s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # this is common code to all the tests, each of which runs test_check with a
     > # different filter:
     > library("icd")
     > library("testthat", warn.conflicts = FALSE, quietly = TRUE)
     > icd:::.show_options()
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > # Definitely don't download data on CRAN
     > if (!icd:::.env_var_is_true("NOT_CRAN")) {
     + old_offline <- options("icd.data.offline" = TRUE)
     + on.exit(options(old_offline), add = TRUE)
     + } else {
     + old_offline <- options("icd.data.offline" = FALSE)
     + on.exit(options(old_offline), add = TRUE)
     + }
     > if (icd:::.env_var_is_true("ICD_TEST_SLOW")) {
     + old_test_slow <- options("icd.test_slow" = TRUE)
     + on.exit(options(old_test_slow), add = TRUE)
     + }
     > old_interact <- options("icd.data.interact" = FALSE)
     > on.exit(options(old_interact), add = TRUE)
     > icd:::.show_options()
     $icd.data.interact
     [1] FALSE
    
     $icd.data.offline
     [1] TRUE
    
     $icd.data.who_url
     [1] "https://icd.who.int/browse10"
    
     > testthat::test_check("icd")
     loading helper-base.R
     loading helper-icd10.R
     ── 1. Failure: van_walraven comodbidity index and score (@test-score.R#333) ───
     van_walraven(mydf, visit_name = "id", icd_name = "value", return_df = TRUE) not equivalent to data.frame(id = factor(c(1, 2, 3)), vanWalraven = c(10, 12, -2)).
     Component "id": target is character, current is factor
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 6000 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 1 ]
     1. Failure: van_walraven comodbidity index and score (@test-score.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86