CRAN Package Check Results for Package portalr

Last updated on 2020-04-25 09:47:02 CEST.

Check Details

Version: 0.3.3
Check: tests
Result: ERROR
     Running 'testthat.R' [195s/231s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     -- 1. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     -- 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     -- 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     -- 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     == testthat results ===========================================================
     [ OK: 194 | SKIPPED: 10 | WARNINGS: 4 | FAILED: 4 ]
     1. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [158s/250s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     ── 1. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     ── 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     ── 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     ── 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 194 | SKIPPED: 10 | WARNINGS: 4 | FAILED: 4 ]
     1. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.3.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [239s/264s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     ── 1. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     ── 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     ── 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     ── 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 194 | SKIPPED: 10 | WARNINGS: 4 | FAILED: 4 ]
     1. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.3.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [10s/206s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     ── 1. Error: load_rodent_data downloads data if missing (@test-01-data-retrieval
     $ operator is invalid for atomic vectors
     Backtrace:
     1. testthat::expect_warning(data_tables <- load_rodent_data(portal_data_path))
     6. portalr::load_rodent_data(portal_data_path)
     7. portalr::load_datafile(...)
     8. portalr::download_observations(path)
     9. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     10. gh:::gh_process_response(raw)
     11. gh:::gh_error(response)
     12. base::paste0("Message: ", res$message)
    
     ── 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     ── 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     ── 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     ── 5. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     ── 6. Error: (unknown) (@test-02-data-processing.R#4) ─────────────────────────
    
     GitHub API error (502):
     Message: Server Error
     Backtrace:
     1. portalr::load_rodent_data(portal_data_path)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     5. base::tryCatch(...)
     6. base:::tryCatchList(expr, classes, parentenv, handlers)
     9. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     10. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     11. value[[3L]](cond)
    
     ── 7. Error: (unknown) (@test-04-weather.R#4) ─────────────────────────────────
    
     GitHub API error (502):
     Message: Server Error
     Backtrace:
     1. portalr::weather("daily", path = portal_data_path)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     5. base::tryCatch(...)
     6. base:::tryCatchList(expr, classes, parentenv, handlers)
     9. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     10. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     11. value[[3L]](cond)
    
     ── 8. Error: summarize_individual_rodents returns expected columns (@test-05-ind
    
     GitHub API error (502):
     Message: Server Error
     Backtrace:
     1. portalr::summarize_individual_rodents(path = portal_data_path)
     2. portalr::load_rodent_data(...)
     3. portalr::load_datafile(...)
     4. portalr::download_observations(path)
     5. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     6. base::tryCatch(...)
     7. base:::tryCatchList(expr, classes, parentenv, handlers)
     10. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     11. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     12. value[[3L]](cond)
    
     ── 9. Error: plant_abundance returns expected results (@test-06-summarize-plants
    
     GitHub API error (500):
     Message: Something went wrong. Please try again. If the problem persists, please contact us.
     Read more at https://githubstatus.com
     Backtrace:
     1. portalr::plant_abundance(...)
     5. portalr::summarize_plant_data(..., shape = "flat", output = "abundance")
     6. portalr::load_plant_data(...)
     7. portalr::load_datafile(...)
     8. portalr::download_observations(path)
     9. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     10. base::tryCatch(...)
     11. base:::tryCatchList(expr, classes, parentenv, handlers)
     14. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     15. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     16. value[[3L]](cond)
    
     ── 10. Error: shrub_cover returns expected results (@test-06-summarize-plants.R#
    
     GitHub API error (403):
     Message: API rate limit exceeded for 163.1.211.17. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
     Read more at https://developer.github.com/v3/#rate-limiting
     Backtrace:
     1. portalr::shrub_cover(...)
     2. portalr::load_plant_data(...)
     3. portalr::load_datafile(...)
     4. portalr::download_observations(path)
     5. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     6. base::tryCatch(...)
     7. base:::tryCatchList(expr, classes, parentenv, handlers)
     10. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     11. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     12. value[[3L]](cond)
    
     ── 11. Error: (unknown) (@test-07-seasons.R#4) ────────────────────────────────
    
     GitHub API error (403):
     Message: API rate limit exceeded for 163.1.211.17. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
     Read more at https://developer.github.com/v3/#rate-limiting
     Backtrace:
     1. portalr::abundance(path = portal_data_path, level = "plot", shape = "flat")
     2. portalr::summarize_rodent_data(..., output = "abundance")
     3. portalr::load_rodent_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     7. base::tryCatch(...)
     8. base:::tryCatchList(expr, classes, parentenv, handlers)
     11. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     12. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     13. value[[3L]](cond)
    
     ── 12. Error: (unknown) (@test-08-NDVI.R#4) ───────────────────────────────────
    
     GitHub API error (403):
     Message: API rate limit exceeded for 163.1.211.17. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
     Read more at https://developer.github.com/v3/#rate-limiting
     Backtrace:
     1. portalr::ndvi("monthly", path = portal_data_path)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     5. base::tryCatch(...)
     6. base:::tryCatchList(expr, classes, parentenv, handlers)
     9. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     10. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     11. value[[3L]](cond)
    
     ── 13. Error: get_future_moons returns expected results using current newmoons_t
    
     GitHub API error (403):
     Message: API rate limit exceeded for 163.1.211.17. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
     Read more at https://developer.github.com/v3/#rate-limiting
     Backtrace:
     1. portalr::load_trapping_data(portal_data_path)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     5. base::tryCatch(...)
     6. base:::tryCatchList(expr, classes, parentenv, handlers)
     9. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     10. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     11. value[[3L]](cond)
    
     ── 14. Error: colony_presence_absence returns expected results (@test-10-summari
    
     GitHub API error (403):
     Message: API rate limit exceeded for 163.1.211.17. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
     Read more at https://developer.github.com/v3/#rate-limiting
     Backtrace:
     1. portalr::colony_presence_absence(...)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     5. base::tryCatch(...)
     6. base:::tryCatchList(expr, classes, parentenv, handlers)
     9. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     10. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     11. value[[3L]](cond)
    
     ── 15. Error: bait_presence_absence returns expected results (@test-10-summarize
    
     GitHub API error (403):
     Message: API rate limit exceeded for 163.1.211.17. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)
     Read more at https://developer.github.com/v3/#rate-limiting
     Backtrace:
     1. portalr::bait_presence_absence(path = portal_data_path, level = "Stake")
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. portalr::get_data_versions(from_zenodo = from_zenodo, halt_on_error = TRUE)
     5. base::tryCatch(...)
     6. base:::tryCatchList(expr, classes, parentenv, handlers)
     9. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     10. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     11. value[[3L]](cond)
    
     ── 16. Error: colony_presence_absence returns expected results (@test-10-summari
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::colony_presence_absence(...)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 17. Error: bait_presence_absence returns expected results (@test-10-summarize
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::bait_presence_absence(path = portal_data_path, level = "plot")
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 18. Error: (unknown) (@test-11-phenocam.R#6) ───────────────────────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::phenocam("newmoon", path = portal_data_path)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 19. Error: data generated by default setting is same ───────────────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::abundance(...)
     2. portalr::summarize_rodent_data(..., output = "abundance")
     3. portalr::load_rodent_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     7. gh:::gh_build_request(...)
     8. gh:::gh_set_dest(working)
     9. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 20. Error: data generated by level = treatment, plots = longterm is same ───
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::abundance(portal_data_path, level = "treatment", plots = "longterm")
     2. portalr::summarize_rodent_data(..., output = "abundance")
     3. portalr::load_rodent_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     7. gh:::gh_build_request(...)
     8. gh:::gh_set_dest(working)
     9. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 21. Error: data generated by level = plot, time = newmoon, type = granivore,
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::abundance(...)
     2. portalr::summarize_rodent_data(..., output = "abundance")
     3. portalr::load_rodent_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     7. gh:::gh_build_request(...)
     8. gh:::gh_set_dest(working)
     9. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 22. Error: data generated by na_drop = FALSE, zero_drop = FALSE is same ────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::abundance(...)
     2. portalr::summarize_rodent_data(..., output = "abundance")
     3. portalr::load_rodent_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     7. gh:::gh_build_request(...)
     8. gh:::gh_set_dest(working)
     9. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 23. Error: data generated by unknowns = T, min_plots = 1 is same ───────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::abundance(portal_data_path, min_plots = 1, unknowns = TRUE)
     2. portalr::summarize_rodent_data(..., output = "abundance")
     3. portalr::load_rodent_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     7. gh:::gh_build_request(...)
     8. gh:::gh_set_dest(working)
     9. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 24. Error: data generated by plots = c(4, 8, 10, 12) is same ───────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::summarize_rodent_data(...)
     2. portalr::load_rodent_data(...)
     3. portalr::load_datafile(...)
     4. portalr::download_observations(path)
     5. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     6. gh:::gh_build_request(...)
     7. gh:::gh_set_dest(working)
     8. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 25. Error: biomass data generated by level = plot is same ──────────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::biomass(...)
     2. portalr::summarize_rodent_data(..., output = "biomass")
     3. portalr::load_rodent_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     7. gh:::gh_build_request(...)
     8. gh:::gh_set_dest(working)
     9. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 26. Error: biomass data generated by min_plots = 1 is same ─────────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::biomass(portal_data_path, type = "rodents", min_plots = 1)
     2. portalr::summarize_rodent_data(..., output = "biomass")
     3. portalr::load_rodent_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     7. gh:::gh_build_request(...)
     8. gh:::gh_set_dest(working)
     9. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 27. Error: data generated by default setting is same (plants) ──────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::plant_abundance(...)
     5. portalr::summarize_plant_data(..., shape = "flat", output = "abundance")
     6. portalr::load_plant_data(...)
     7. portalr::load_datafile(...)
     8. portalr::download_observations(path)
     9. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     10. gh:::gh_build_request(...)
     11. gh:::gh_set_dest(working)
     12. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 28. Error: data generated by type = Shrubs, unknowns = T, correct_sp = F is s
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::plant_abundance(...)
     5. portalr::summarize_plant_data(..., shape = "flat", output = "abundance")
     6. portalr::load_plant_data(...)
     7. portalr::load_datafile(...)
     8. portalr::download_observations(path)
     9. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     10. gh:::gh_build_request(...)
     11. gh:::gh_set_dest(working)
     12. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 29. Error: data generated by level = Plot, type = Annuals, plots = longterm i
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::plant_abundance(...)
     5. portalr::summarize_plant_data(..., shape = "flat", output = "abundance")
     6. portalr::load_plant_data(...)
     7. portalr::load_datafile(...)
     8. portalr::download_observations(path)
     9. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     10. gh:::gh_build_request(...)
     11. gh:::gh_set_dest(working)
     12. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 30. Error: data generated by level = quadrat is same (plants) ──────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::plant_abundance(portal_data_path, level = "quadrat")
     5. portalr::summarize_plant_data(..., shape = "flat", output = "abundance")
     6. portalr::load_plant_data(...)
     7. portalr::load_datafile(...)
     8. portalr::download_observations(path)
     9. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     10. gh:::gh_build_request(...)
     11. gh:::gh_set_dest(working)
     12. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 31. Error: data generated by level = quadrat, shape = crosstab, output = cove
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::summarize_plant_data(...)
     2. portalr::load_plant_data(...)
     3. portalr::load_datafile(...)
     4. portalr::download_observations(path)
     5. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     6. gh:::gh_build_request(...)
     7. gh:::gh_set_dest(working)
     8. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 32. Error: data generated by shape = crosstab is same (plants) ─────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::plant_abundance(portal_data_path, shape = "crosstab")
     2. portalr::summarize_plant_data(..., shape = "crosstab", output = "abundance")
     3. portalr::load_plant_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     7. gh:::gh_build_request(...)
     8. gh:::gh_set_dest(working)
     9. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 33. Error: data generated by default setting is same (shrub_cover) ─────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::shrub_cover(...)
     2. portalr::load_plant_data(...)
     3. portalr::load_datafile(...)
     4. portalr::download_observations(path)
     5. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     6. gh:::gh_build_request(...)
     7. gh:::gh_set_dest(working)
     8. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 34. Error: data generated by default setting is same (ant colony_presence_abs
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::colony_presence_absence(portal_data_path, level = "site")
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 35. Error: data generated by default setting is same (ant bait_presence_absen
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::bait_presence_absence(portal_data_path, level = "Site")
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 36. Error: data generated by level = 'stake' is same (ant colony_presence_abs
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::colony_presence_absence(portal_data_path, level = "stake")
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 37. Error: data generated by level = 'stake' is same (ant bait_presence_absen
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::bait_presence_absence(portal_data_path, level = "stake")
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 38. Error: data generated by level = 'plot' is same (ant colony_presence_abse
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::colony_presence_absence(portal_data_path, level = "plot")
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 39. Error: data generated by level = 'plot' is same (ant bait_presence_absenc
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::bait_presence_absence(portal_data_path, level = "plot")
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 40. Error: data generated by default setting is same (weather) ─────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::weather(path = portal_data_path)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 41. Error: data generated by fill = TRUE is same (weather) ─────────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::weather(fill = TRUE, path = portal_data_path)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 42. Error: data generated by default setting is same (NDVI) ────────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::ndvi(path = portal_data_path)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 43. Error: data generated by fill = TRUE is same (NDVI) ────────────────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::ndvi(path = portal_data_path, fill = TRUE)
     2. portalr::load_datafile(...)
     3. portalr::download_observations(path)
     4. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     5. gh:::gh_build_request(...)
     6. gh:::gh_set_dest(working)
     7. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ── 44. Error: seasonal summaries generated by default setting is same ─────────
     Path exists and overwrite is FALSE
     Backtrace:
     1. portalr::abundance(...)
     2. portalr::summarize_rodent_data(..., output = "abundance")
     3. portalr::load_rodent_data(...)
     4. portalr::load_datafile(...)
     5. portalr::download_observations(path)
     6. gh::gh(paste("GET", zip_download_path), .destfile = zip_download_dest)
     7. gh:::gh_build_request(...)
     8. gh:::gh_set_dest(working)
     9. httr::write_disk(x$dest, overwrite = x$overwrite)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 16 | SKIPPED: 10 | WARNINGS: 39 | FAILED: 44 ]
     1. Error: load_rodent_data downloads data if missing (@test-01-data-retrieval.R#33)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     5. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
     6. Error: (unknown) (@test-02-data-processing.R#4)
     7. Error: (unknown) (@test-04-weather.R#4)
     8. Error: summarize_individual_rodents returns expected columns (@test-05-individual-stake-data.R#6)
     9. Error: plant_abundance returns expected results (@test-06-summarize-plants.R#6)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.3.3
Check: tests
Result: ERROR
     Running 'testthat.R' [195s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     -- 1. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     -- 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     -- 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     -- 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     == testthat results ===========================================================
     [ OK: 194 | SKIPPED: 10 | WARNINGS: 4 | FAILED: 4 ]
     1. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.3.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [192s/236s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     ── 1. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     ── 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     ── 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     ── 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 194 | SKIPPED: 10 | WARNINGS: 4 | FAILED: 4 ]
     1. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.3.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [329s/448s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     ── 1. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     ── 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     ── 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     ── 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 194 | SKIPPED: 10 | WARNINGS: 4 | FAILED: 4 ]
     1. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.3.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [186s/227s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     ── 1. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     ── 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     ── 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     ── 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 194 | SKIPPED: 10 | WARNINGS: 4 | FAILED: 4 ]
     1. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.3.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘portal_researcher_examples.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'portal_researcher_examples.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘portal_researcher_examples.Rmd’
    
    --- re-building ‘rodent-abundance-demo.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'rodent-abundance-demo.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘rodent-abundance-demo.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘portal_researcher_examples.Rmd’ ‘rodent-abundance-demo.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.3.3
Check: tests
Result: ERROR
     Running 'testthat.R' [200s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     -- 1. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     -- 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     -- 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     -- 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     == testthat results ===========================================================
     [ OK: 194 | SKIPPED: 10 | WARNINGS: 4 | FAILED: 4 ]
     1. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.3.3
Check: tests
Result: ERROR
     Running 'testthat.R' [237s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(portalr)
     >
     > test_check("portalr")
     -- 1. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Call `usethis::edit_r_environ\\(\\)` to open '.Renviron'".
     Actual value: ""
    
     -- 2. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Store your data path with a line like:".
     Actual value: ""
    
     -- 3. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "PORTALR_DATA_PATH=".
     Actual value: ""
    
     -- 4. Failure: default data path functions work if unset (@test-01-data-retrieva
     `m` does not match "Make sure '.Renviron' ends with a newline!".
     Actual value: ""
    
     -- 5. Error: (unknown) (@test-11-phenocam.R#4) --------------------------------
     cannot open the connection
     Backtrace:
     1. portalr::phenocam("daily", path = portal_data_path)
     5. utils::read.csv(...)
     6. utils::read.table(...)
     8. base::open.connection(file, "rt")
    
     -- 6. Error: data generated by default setting is same (phenocam) -------------
     cannot open the connection
     Backtrace:
     1. portalr::phenocam(path = portal_data_path)
     5. utils::read.csv(...)
     6. utils::read.table(...)
     8. base::open.connection(file, "rt")
    
     == testthat results ===========================================================
     [ OK: 186 | SKIPPED: 10 | WARNINGS: 6 | FAILED: 6 ]
     1. Failure: default data path functions work if unset (@test-01-data-retrieval.R#107)
     2. Failure: default data path functions work if unset (@test-01-data-retrieval.R#108)
     3. Failure: default data path functions work if unset (@test-01-data-retrieval.R#109)
     4. Failure: default data path functions work if unset (@test-01-data-retrieval.R#110)
     5. Error: (unknown) (@test-11-phenocam.R#4)
     6. Error: data generated by default setting is same (phenocam)
    
     Error: testthat unit tests failed
     In addition: Warning messages:
     1: In sys.parent() :
     closing unused connection 4 (http://phenocam.sr.unh.edu/data/archive/portal/ROI/portal_SH_1000_1day.csv)
     2: In .Internal(sys.function(which)) :
     closing unused connection 4 (http://phenocam.sr.unh.edu/data/archive/portal/ROI/portal_SH_1000_1day.csv)
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64