Last updated on 2020-04-30 07:48:31 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.6 | 6.67 | 84.62 | 91.29 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.4.6 | 4.66 | 64.07 | 68.73 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.4.6 | 104.58 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4.6 | 134.66 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.4.6 | 16.00 | 104.00 | 120.00 | OK | |
| r-patched-linux-x86_64 | 1.4.6 | 5.28 | 84.49 | 89.77 | NOTE | |
| r-patched-solaris-x86 | 1.4.6 | 162.40 | NOTE | |||
| r-release-linux-x86_64 | 1.4.6 | 6.44 | 83.72 | 90.16 | NOTE | |
| r-release-osx-x86_64 | 1.4.6 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.4.6 | 11.00 | 104.00 | 115.00 | OK | |
| r-oldrel-osx-x86_64 | 1.4.6 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.4.6 | 9.00 | 113.00 | 122.00 | OK |
Version: 1.4.6
Check: package dependencies
Result: NOTE
Package which this enhances but not available for checking: 'INLA'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 1.4.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘mapmisc’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.4.6
Check: examples
Result: ERROR
Running examples in ‘diseasemapping-Ex.R’ failed
The error most likely occurred in:
> ### Name: kentucky
> ### Title: Larynx cancer cases and population in Kentucky
> ### Aliases: kentucky kentuckyTract larynx larynxRates
> ### Keywords: datasets
>
> ### ** Examples
>
> data('kentucky')
>
> head(larynx)
County Cases sex age
1 Hickman 2 M NA
2 Caldwell 3 M NA
3 Anderson 3 M NA
4 Marion 3 M NA
5 Wayne 4 M NA
6 Lincoln 3 M NA
> 10^5*larynxRates[paste(c("M","F"), 50, sep="_")]
M_50 F_50
9.9 2.3
>
>
> kentucky2 = getSMR(kentucky, larynxRates, larynx,
+ regionCode="County")
>
> names(kentucky2)
[1] "County" "M.0" "F.0" "M.5" "F.5"
[6] "M.10" "F.10" "M.15" "F.15" "M.20"
[11] "F.20" "M.25" "F.25" "M.30" "F.30"
[16] "M.35" "F.35" "M.40" "F.40" "M.45"
[21] "F.45" "M.50" "F.50" "M.55" "F.55"
[26] "M.60" "F.60" "M.65" "F.65" "M.70"
[31] "F.70" "M.75" "F.75" "M.80" "F.80"
[36] "M.85" "F.85" "poverty" "expected" "logExpected"
[41] "observed" "SMR"
> length(kentucky2)
[1] 120
>
> data('kentuckyTract')
> length(kentuckyTract)
[1] 994
>
> if(require('mapmisc', quietly=TRUE)) {
+ mycol = colourScale(kentucky2$SMR,
+ breaks=10, dec=-log10(0.5), style='quantile')
+ map.new(kentucky2)
+ plot(kentucky2, col=mycol$plot, border='#00000040',add=TRUE)
+ legendBreaks('topright', mycol)
+ } else {
+ plot(kentucky2)
+ }
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘mapmisc’
Error in as.double(y) :
cannot coerce type 'S4' to vector of type 'double'
Calls: plot -> plot.default -> xy.coords
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc