Last updated on 2020-05-01 09:55:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.2 | 13.37 | 167.46 | 180.83 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 11.96 | 126.29 | 138.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 208.97 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 212.88 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.2.2 | 24.00 | 176.00 | 200.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.2 | 13.15 | 162.89 | 176.04 | ERROR | |
| r-patched-solaris-x86 | 0.2.2 | 271.70 | ERROR | |||
| r-release-linux-x86_64 | 0.2.2 | 12.02 | 160.97 | 172.99 | ERROR | |
| r-release-osx-x86_64 | 0.2.2 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.2.2 | 21.00 | 157.00 | 178.00 | ERROR | |
| r-oldrel-osx-x86_64 | 0.2.2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.2.2 | 19.00 | 215.00 | 234.00 | ERROR |
Version: 0.2.2
Check: examples
Result: ERROR
Running examples in 'INDperform-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: merge_models
> ### Title: Merging two model output tibbles.
> ### Aliases: merge_models
>
> ### ** Examples
>
> # Using some models of the Baltic Sea demo data:
> # Merging GAM and GAMM tibbles
> test_ids <- 47:50 # choose subset
> gam_tbl <- model_gam_ex[test_ids,]
> gamm_tbl <- model_gamm(ind_init_ex[test_ids,], filter= gam_tbl$tac)
Error in model_gamm(ind_init_ex[test_ids, ], filter = gam_tbl$tac) :
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [88s/95s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[~
-- 1. Error: (unknown) (@test_model_gamm.R#4) ---------------------------------
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +~
variable required_data_type
1 edf double
variable required_data_type
1 pred list
-- 2. Error: (unknown) (@test_scoring.R#15) -----------------------------------
Assigned data `"x < 0.3"` must be compatible with existing data.
i Error occurred for column `condition`.
x No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
== testthat results ===========================================================
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [66s/93s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[…
── 1. Error: (unknown) (@test_model_gamm.R#4) ─────────────────────────────────
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +…
variable required_data_type
1 edf double
variable required_data_type
1 pred list
── 2. Error: (unknown) (@test_scoring.R#15) ───────────────────────────────────
Assigned data `"x < 0.3"` must be compatible with existing data.
ℹ Error occurred for column `condition`.
✖ No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.2
Check: installed package size
Result: NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
data 3.1Mb
help 1.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.2.2
Check: examples
Result: ERROR
Running examples in ‘INDperform-Ex.R’ failed
The error most likely occurred in:
> ### Name: merge_models
> ### Title: Merging two model output tibbles.
> ### Aliases: merge_models
>
> ### ** Examples
>
> # Using some models of the Baltic Sea demo data:
> # Merging GAM and GAMM tibbles
> test_ids <- 47:50 # choose subset
> gam_tbl <- model_gam_ex[test_ids,]
> gamm_tbl <- model_gamm(ind_init_ex[test_ids,], filter= gam_tbl$tac)
Error in model_gamm(ind_init_ex[test_ids, ], filter = gam_tbl$tac) :
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [98s/125s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[…
── 1. Error: (unknown) (@test_model_gamm.R#4) ─────────────────────────────────
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +…
variable required_data_type
1 edf double
variable required_data_type
1 pred list
── 2. Error: (unknown) (@test_scoring.R#15) ───────────────────────────────────
Assigned data `"x < 0.3"` must be compatible with existing data.
ℹ Error occurred for column `condition`.
✖ No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [103s/120s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[…
── 1. Error: (unknown) (@test_model_gamm.R#4) ─────────────────────────────────
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +…
variable required_data_type
1 edf double
variable required_data_type
1 pred list
── 2. Error: (unknown) (@test_scoring.R#15) ───────────────────────────────────
Assigned data `"x < 0.3"` must be compatible with existing data.
ℹ Error occurred for column `condition`.
✖ No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [81s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[~
-- 1. Error: (unknown) (@test_model_gamm.R#4) ---------------------------------
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +~
variable required_data_type
1 edf double
variable required_data_type
1 pred list
-- 2. Error: (unknown) (@test_scoring.R#15) -----------------------------------
Assigned data `"x < 0.3"` must be compatible with existing data.
i Error occurred for column `condition`.
x No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
== testthat results ===========================================================
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/90s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[…
── 1. Error: (unknown) (@test_model_gamm.R#4) ─────────────────────────────────
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +…
variable required_data_type
1 edf double
variable required_data_type
1 pred list
── 2. Error: (unknown) (@test_scoring.R#15) ───────────────────────────────────
Assigned data `"x < 0.3"` must be compatible with existing data.
ℹ Error occurred for column `condition`.
✖ No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [123s/152s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[…
── 1. Error: (unknown) (@test_model_gamm.R#4) ─────────────────────────────────
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +…
variable required_data_type
1 edf double
variable required_data_type
1 pred list
── 2. Error: (unknown) (@test_scoring.R#15) ───────────────────────────────────
Assigned data `"x < 0.3"` must be compatible with existing data.
ℹ Error occurred for column `condition`.
✖ No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [84s/90s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[…
── 1. Error: (unknown) (@test_model_gamm.R#4) ─────────────────────────────────
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +…
variable required_data_type
1 edf double
variable required_data_type
1 pred list
── 2. Error: (unknown) (@test_scoring.R#15) ───────────────────────────────────
Assigned data `"x < 0.3"` must be compatible with existing data.
ℹ Error occurred for column `condition`.
✖ No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [40s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [78s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[~
-- 1. Error: (unknown) (@test_model_gamm.R#4) ---------------------------------
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +~
variable required_data_type
1 edf double
variable required_data_type
1 pred list
-- 2. Error: (unknown) (@test_scoring.R#15) -----------------------------------
Assigned data `"x < 0.3"` must be compatible with existing data.
i Error occurred for column `condition`.
x No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
== testthat results ===========================================================
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [101s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(INDperform)
>
> test_check("INDperform")
variable required_data_type
1 edf double
# A tibble: 2 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
variable required_data_type
1 a list
2 b factor
3 c character
[1] 1 1 1 1 1 1 1 2
[1] 2 2 4 2 2 2 2 2
# A tibble: 12 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 1 TZA Tsum 3 3
2 3 MS Tsum 3 3
3 5 rCC Tsum 3 3
4 7 Cops Tsum 3 3
5 9 Micro Tsum 3 3
6 11 rZPPP Tsum 3 3
7 13 Sprat Tsum 3 3
8 15 Herring Tsum 3 3
9 17 Stickle Tsum 3 3
10 19 Cod Tsum 3 3
11 21 SPF Tsum 3 3
12 23 LPF Tsum 3 3
# A tibble: 1 x 5
id ind press nr_test_timesteps NAs_in_ind_press
<int> <chr> <chr> <int> <int>
1 3 test_ind press 3 3
variable required_data_type
1 id integer
# A tibble: 1 x 4
id ind press error_message
<int> <chr> <chr> <chr>
1 3 test_ind press "Error in mgcv::gam(stats::as.formula(paste0(names(dat)[~
-- 1. Error: (unknown) (@test_model_gamm.R#4) ---------------------------------
No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()).
Backtrace:
1. INDperform::model_gamm(init_tbl = ind_init_ex[test_id, ])
# A tibble: 1 x 3
ind_id ind error_message
<int> <chr> <chr>
1 5 ind_na "Error in mgcv::gam(stats::as.formula(paste0(ind_name, \" ~ 1 +~
variable required_data_type
1 edf double
variable required_data_type
1 pred list
-- 2. Error: (unknown) (@test_scoring.R#15) -----------------------------------
Assigned data `"x < 0.3"` must be compatible with existing data.
i Error occurred for column `condition`.
x No common type for `value` <character> and `x` <list>.
Backtrace:
1. base::`[<-`(`*tmp*`, 4, "condition", value = "x < 0.3")
2. tibble:::`[<-.tbl_df`(`*tmp*`, 4, "condition", value = "x < 0.3")
3. tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
4. tibble:::tbl_subassign_row(xj, i, value, value_arg)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
== testthat results ===========================================================
[ OK: 544 | SKIPPED: 0 | WARNINGS: 8 | FAILED: 2 ]
1. Error: (unknown) (@test_model_gamm.R#4)
2. Error: (unknown) (@test_scoring.R#15)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64