Last updated on 2020-05-04 04:48:32 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.5 | 9.59 | 65.04 | 74.63 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.5 | 8.34 | 55.63 | 63.97 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.5 | 106.10 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.5 | 107.34 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.5 | 25.00 | 352.00 | 377.00 | OK | |
| r-patched-linux-x86_64 | 1.5 | 8.28 | 67.64 | 75.92 | WARN | |
| r-patched-solaris-x86 | 1.5 | 149.80 | WARN | |||
| r-release-linux-x86_64 | 1.5 | 9.75 | 68.67 | 78.42 | WARN | |
| r-release-osx-x86_64 | 1.5 | WARN | ||||
| r-release-windows-ix86+x86_64 | 1.5 | 17.00 | 75.00 | 92.00 | WARN | |
| r-oldrel-osx-x86_64 | 1.5 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.5 | 14.00 | 99.00 | 113.00 | WARN |
Version: 1.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'NEArender_vignette.Rmd' using rmarkdown
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Quitting from lines 174-175 (NEArender_vignette.Rmd)
Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/cluster2_Downregulated_ags.txt'
--- failed re-building 'NEArender_vignette.Rmd'
SUMMARY: processing the following file failed:
'NEArender_vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.5
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'single_gene_ags.groups.tsv'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Quitting from lines 196-198 (NEArender_vignette.Rmd)
Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/can.sig.go.txt'
--- failed re-building ‘NEArender_vignette.Rmd’
SUMMARY: processing the following file failed:
‘NEArender_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
Quitting from lines 174-175 (NEArender_vignette.Rmd)
Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/cluster2_Downregulated_ags.txt'
--- failed re-building ‘NEArender_vignette.Rmd’
SUMMARY: processing the following file failed:
‘NEArender_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Quitting from lines 237-239 (NEArender_vignette.Rmd)
Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
cannot read from connection
--- failed re-building ‘NEArender_vignette.Rmd’
SUMMARY: processing the following file failed:
‘NEArender_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Quitting from lines 228-229 (NEArender_vignette.Rmd)
Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/net.kegg.txt'
--- failed re-building ‘NEArender_vignette.Rmd’
SUMMARY: processing the following file failed:
‘NEArender_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
Quitting from lines 174-175 (NEArender_vignette.Rmd)
Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/cluster2_Downregulated_ags.txt'
--- failed re-building ‘NEArender_vignette.Rmd’
SUMMARY: processing the following file failed:
‘NEArender_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'NEArender_vignette.Rmd' using rmarkdown
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Quitting from lines 174-175 (NEArender_vignette.Rmd)
Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'NEArender_vignette.Rmd'
SUMMARY: processing the following file failed:
'NEArender_vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64