CRAN Package Check Results for Package NEArender

Last updated on 2020-05-04 04:48:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5 9.59 65.04 74.63 WARN
r-devel-linux-x86_64-debian-gcc 1.5 8.34 55.63 63.97 WARN
r-devel-linux-x86_64-fedora-clang 1.5 106.10 WARN
r-devel-linux-x86_64-fedora-gcc 1.5 107.34 WARN
r-devel-windows-ix86+x86_64 1.5 25.00 352.00 377.00 OK
r-patched-linux-x86_64 1.5 8.28 67.64 75.92 WARN
r-patched-solaris-x86 1.5 149.80 WARN
r-release-linux-x86_64 1.5 9.75 68.67 78.42 WARN
r-release-osx-x86_64 1.5 WARN
r-release-windows-ix86+x86_64 1.5 17.00 75.00 92.00 WARN
r-oldrel-osx-x86_64 1.5 OK
r-oldrel-windows-ix86+x86_64 1.5 14.00 99.00 113.00 WARN

Check Details

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'NEArender_vignette.Rmd' using rmarkdown
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Quitting from lines 174-175 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/cluster2_Downregulated_ags.txt'
    --- failed re-building 'NEArender_vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'NEArender_vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.5
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'single_gene_ags.groups.tsv'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Quitting from lines 196-198 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/can.sig.go.txt'
    --- failed re-building ‘NEArender_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘NEArender_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
    Quitting from lines 174-175 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/cluster2_Downregulated_ags.txt'
    --- failed re-building ‘NEArender_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘NEArender_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Quitting from lines 237-239 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot read from connection
    --- failed re-building ‘NEArender_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘NEArender_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Quitting from lines 228-229 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/net.kegg.txt'
    --- failed re-building ‘NEArender_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘NEArender_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-linux-x86_64

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
    Quitting from lines 174-175 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/cluster2_Downregulated_ags.txt'
    --- failed re-building ‘NEArender_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘NEArender_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'NEArender_vignette.Rmd' using rmarkdown
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Quitting from lines 174-175 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building 'NEArender_vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'NEArender_vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64