CRAN Package Check Results for Package bayesCT

Last updated on 2020-05-12 16:50:35 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.99.2	13.71	338.68	352.39	OK
r-devel-linux-x86_64-debian-gcc	0.99.2	10.80	226.20	237.00	WARN
r-devel-linux-x86_64-fedora-clang	0.99.2			409.49	NOTE
r-devel-linux-x86_64-fedora-gcc	0.99.2			412.86	NOTE
r-devel-windows-ix86+x86_64	0.99.2	41.00	350.00	391.00	WARN
r-patched-linux-x86_64	0.99.2	12.30	303.15	315.45	WARN
r-patched-solaris-x86	0.99.2			536.50	NOTE
r-release-linux-x86_64	0.99.2	12.70	326.89	339.59	OK
r-release-osx-x86_64	0.99.2				NOTE
r-release-windows-ix86+x86_64	0.99.2	46.00	440.00	486.00	OK
r-oldrel-osx-x86_64	0.99.2				NOTE
r-oldrel-windows-ix86+x86_64	0.99.2	26.00	261.00	287.00	WARN

Check Details

Version: 0.99.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘bayesCT.Rmd’ using rmarkdown
    --- finished re-building ‘bayesCT.Rmd’

    --- re-building ‘binomial.Rmd’ using rmarkdown

    Attaching package: 'bayesCT'

    The following object is masked from 'package:stats':

     simulate

    --- finished re-building ‘binomial.Rmd’

    --- re-building ‘normal.Rmd’ using rmarkdown

    Attaching package: 'bayesCT'

    The following object is masked from 'package:stats':

     simulate

    --- finished re-building ‘normal.Rmd’

    --- re-building ‘time-to-event.Rmd’ using rmarkdown

    Attaching package: 'bayesCT'

    The following object is masked from 'package:stats':

     simulate

    Quitting from lines 232-240 (time-to-event.Rmd)

     *** caught segfault ***
    address 0x555bb2af3b58, cause 'memory not mapped'

    Traceback:
     1: list.files(tempdir(), sprintf("^%s[0-9a-f]+[.]html$", tmpfile_pattern), full.names = TRUE)
     2: unlink(list.files(tempdir(), sprintf("^%s[0-9a-f]+[.]html$", tmpfile_pattern), full.names = TRUE))
     3: clean_tmpfiles()
     4: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
     5: vweave_rmarkdown(...)
     6: engine$weave(file, quiet = quiet, encoding = enc)
     7: doTryCatch(return(expr), name, parentenv, handler)
     8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     9: tryCatchList(expr, classes, parentenv, handlers)
    10: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
    11: tools:::.buildOneVignette("time-to-event.Rmd", "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bayesCT.Rcheck/vign_test/bayesCT", TRUE, FALSE, "time-to-event", "UTF-8", "/home/hornik/tmp/scratch/RtmpnFisBs/filef9d177fc479.rds")
    An irrecoverable exception occurred. R is aborting now ...
    Segmentation fault
    SUMMARY: processing the following file failed:
     ‘time-to-event.Rmd’

    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.99.2
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘msm’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.99.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'bayesCT.Rmd' using rmarkdown
    --- finished re-building 'bayesCT.Rmd'

    --- re-building 'binomial.Rmd' using rmarkdown

    Attaching package: 'bayesCT'

    The following object is masked from 'package:stats':

     simulate

    Quitting from lines 215-223 (binomial.Rmd)
    Error: processing vignette 'binomial.Rmd' failed with diagnostics:
    Column `enrollment` is of unsupported type function
    --- failed re-building 'binomial.Rmd'

    --- re-building 'normal.Rmd' using rmarkdown

    Attaching package: 'bayesCT'

    The following object is masked from 'package:stats':

     simulate

    --- finished re-building 'normal.Rmd'

    --- re-building 'time-to-event.Rmd' using rmarkdown

    Attaching package: 'bayesCT'

    The following object is masked from 'package:stats':

     simulate

    --- finished re-building 'time-to-event.Rmd'

    SUMMARY: processing the following file failed:
     'binomial.Rmd'

    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.99.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'bayesCT.Rmd' using rmarkdown
    --- finished re-building 'bayesCT.Rmd'

    --- re-building 'binomial.Rmd' using rmarkdown

    Attaching package: 'bayesCT'

    The following object is masked from 'package:stats':

     simulate

    Quitting from lines 228-236 (binomial.Rmd)
    Error: processing vignette 'binomial.Rmd' failed with diagnostics:
    missing value where TRUE/FALSE needed
    --- failed re-building 'binomial.Rmd'

    --- re-building 'normal.Rmd' using rmarkdown

    Attaching package: 'bayesCT'

    The following object is masked from 'package:stats':

     simulate

    --- finished re-building 'normal.Rmd'

    --- re-building 'time-to-event.Rmd' using rmarkdown

    Attaching package: 'bayesCT'

    The following object is masked from 'package:stats':

     simulate

    --- finished re-building 'time-to-event.Rmd'

    SUMMARY: processing the following file failed:
     'binomial.Rmd'

    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64