Last updated on 2020-06-15 08:53:13 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 2.65 | 32.09 | 34.74 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 2.27 | 25.02 | 27.29 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 49.39 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 41.96 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.4.0 | 10.00 | 47.00 | 57.00 | ERROR | |
| r-patched-linux-x86_64 | 0.4.0 | 2.65 | 31.47 | 34.12 | ERROR | |
| r-patched-solaris-x86 | 0.4.0 | 61.90 | ERROR | |||
| r-release-linux-x86_64 | 0.4.0 | 2.75 | 31.58 | 34.33 | ERROR | |
| r-release-osx-x86_64 | 0.4.0 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.4.0 | 13.00 | 47.00 | 60.00 | ERROR | |
| r-oldrel-osx-x86_64 | 0.4.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.4.0 | 7.00 | 43.00 | 50.00 | ERROR |
Version: 0.4.0
Check: examples
Result: ERROR
Running examples in 'episheet-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: risk
> ### Title: Calculate risk ratio and risk difference
> ### Aliases: risk
>
> ### ** Examples
>
> # Data from stratum 1 of table 15-1., p260
> dat <- data.frame(
+ exposure_var = c(rep(1, 8), rep(0, 5), rep(1, 98), rep(0, 115)),
+ outcome_var = c(rep(1, 8), rep(1, 5), rep(0, 98), rep(0, 115)),
+ stringsAsFactors = FALSE
+ )
> risk(data = dat, exposure = exposure_var, outcome = outcome_var)
Error: Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
x
1. \-episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
2. \-`%>%`(...)
3. +-base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
4. \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
5. \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
6. \-episheet:::`_fseq`(`_lhs`)
7. \-magrittr::freduce(value, `_function_list`)
8. \-function_list[[i]](value)
9. +-dplyr::summarise(., n = n())
10. \-dplyr:::summarise.data.frame(., n = n())
11. \-dplyr:::summarise_cols(.data, ...)
<parent: error/simpleError>
Backtrace:
x
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4.0
Check: tests
Result: ERROR
Running 'testthat.R' [3s/5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(episheet)
>
> test_check("episheet")
-- 1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16) -------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 2. Error: Test risk_ratio returns exected lci (@test-risk.R#21) ------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 3. Error: Test risk_ratio returns exected uci (@test-risk.R#26) ------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 4. Error: Test risk_diff returns exected estimate (@test-risk.R#31) --------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 5. Error: Test risk_diff returns exected lci (@test-risk.R#36) -------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 6. Error: Test risk_diff returns exected uci (@test-risk.R#41) -------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 7. Error: rrmh returns expected value (@test-stratified_risk.R#6) ----------
Problem with `summarise()` input `Ts`.
x could not find function "n"
i Input `Ts` is `n()`.
i The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
-- 8. Error: lci return expected value (@test-stratified_risk.R#13) -----------
Problem with `summarise()` input `Ts`.
x could not find function "n"
i Input `Ts` is `n()`.
i The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
-- 9. Error: uci return expected value (@test-stratified_risk.R#28) -----------
Problem with `summarise()` input `Ts`.
x could not find function "n"
i Input `Ts` is `n()`.
i The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
== testthat results ===========================================================
[ OK: 6 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ]
1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16)
2. Error: Test risk_ratio returns exected lci (@test-risk.R#21)
3. Error: Test risk_ratio returns exected uci (@test-risk.R#26)
4. Error: Test risk_diff returns exected estimate (@test-risk.R#31)
5. Error: Test risk_diff returns exected lci (@test-risk.R#36)
6. Error: Test risk_diff returns exected uci (@test-risk.R#41)
7. Error: rrmh returns expected value (@test-stratified_risk.R#6)
8. Error: lci return expected value (@test-stratified_risk.R#13)
9. Error: uci return expected value (@test-stratified_risk.R#28)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4.0
Check: examples
Result: ERROR
Running examples in ‘episheet-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: risk
> ### Title: Calculate risk ratio and risk difference
> ### Aliases: risk
>
> ### ** Examples
>
> # Data from stratum 1 of table 15-1., p260
> dat <- data.frame(
+ exposure_var = c(rep(1, 8), rep(0, 5), rep(1, 98), rep(0, 115)),
+ outcome_var = c(rep(1, 8), rep(1, 5), rep(0, 98), rep(0, 115)),
+ stringsAsFactors = FALSE
+ )
> risk(data = dat, exposure = exposure_var, outcome = outcome_var)
Error: Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
█
1. └─episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
2. └─`%>%`(...)
3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
6. └─episheet:::`_fseq`(`_lhs`)
7. └─magrittr::freduce(value, `_function_list`)
8. └─function_list[[i]](value)
9. ├─dplyr::summarise(., n = n())
10. └─dplyr:::summarise.data.frame(., n = n())
11. └─dplyr:::summarise_cols(.data, ...)
<parent: error/simpleError>
Backtrace:
█
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(episheet)
>
> test_check("episheet")
── 1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16) ───────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 2. Error: Test risk_ratio returns exected lci (@test-risk.R#21) ────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 3. Error: Test risk_ratio returns exected uci (@test-risk.R#26) ────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 4. Error: Test risk_diff returns exected estimate (@test-risk.R#31) ────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 5. Error: Test risk_diff returns exected lci (@test-risk.R#36) ─────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 6. Error: Test risk_diff returns exected uci (@test-risk.R#41) ─────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 7. Error: rrmh returns expected value (@test-stratified_risk.R#6) ──────────
Problem with `summarise()` input `Ts`.
✖ could not find function "n"
ℹ Input `Ts` is `n()`.
ℹ The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
── 8. Error: lci return expected value (@test-stratified_risk.R#13) ───────────
Problem with `summarise()` input `Ts`.
✖ could not find function "n"
ℹ Input `Ts` is `n()`.
ℹ The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
── 9. Error: uci return expected value (@test-stratified_risk.R#28) ───────────
Problem with `summarise()` input `Ts`.
✖ could not find function "n"
ℹ Input `Ts` is `n()`.
ℹ The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 6 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ]
1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16)
2. Error: Test risk_ratio returns exected lci (@test-risk.R#21)
3. Error: Test risk_ratio returns exected uci (@test-risk.R#26)
4. Error: Test risk_diff returns exected estimate (@test-risk.R#31)
5. Error: Test risk_diff returns exected lci (@test-risk.R#36)
6. Error: Test risk_diff returns exected uci (@test-risk.R#41)
7. Error: rrmh returns expected value (@test-stratified_risk.R#6)
8. Error: lci return expected value (@test-stratified_risk.R#13)
9. Error: uci return expected value (@test-stratified_risk.R#28)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.0
Check: examples
Result: ERROR
Running examples in ‘episheet-Ex.R’ failed
The error most likely occurred in:
> ### Name: risk
> ### Title: Calculate risk ratio and risk difference
> ### Aliases: risk
>
> ### ** Examples
>
> # Data from stratum 1 of table 15-1., p260
> dat <- data.frame(
+ exposure_var = c(rep(1, 8), rep(0, 5), rep(1, 98), rep(0, 115)),
+ outcome_var = c(rep(1, 8), rep(1, 5), rep(0, 98), rep(0, 115)),
+ stringsAsFactors = FALSE
+ )
> risk(data = dat, exposure = exposure_var, outcome = outcome_var)
Error: Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
█
1. └─episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
2. └─`%>%`(...)
3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
6. └─episheet:::`_fseq`(`_lhs`)
7. └─magrittr::freduce(value, `_function_list`)
8. └─function_list[[i]](value)
9. ├─dplyr::summarise(., n = n())
10. └─dplyr:::summarise.data.frame(., n = n())
11. └─dplyr:::summarise_cols(.data, ...)
<parent: error/simpleError>
Backtrace:
█
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(episheet)
>
> test_check("episheet")
── 1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16) ───────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 2. Error: Test risk_ratio returns exected lci (@test-risk.R#21) ────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 3. Error: Test risk_ratio returns exected uci (@test-risk.R#26) ────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 4. Error: Test risk_diff returns exected estimate (@test-risk.R#31) ────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 5. Error: Test risk_diff returns exected lci (@test-risk.R#36) ─────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 6. Error: Test risk_diff returns exected uci (@test-risk.R#41) ─────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 7. Error: rrmh returns expected value (@test-stratified_risk.R#6) ──────────
Problem with `summarise()` input `Ts`.
✖ could not find function "n"
ℹ Input `Ts` is `n()`.
ℹ The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
── 8. Error: lci return expected value (@test-stratified_risk.R#13) ───────────
Problem with `summarise()` input `Ts`.
✖ could not find function "n"
ℹ Input `Ts` is `n()`.
ℹ The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
── 9. Error: uci return expected value (@test-stratified_risk.R#28) ───────────
Problem with `summarise()` input `Ts`.
✖ could not find function "n"
ℹ Input `Ts` is `n()`.
ℹ The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 6 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ]
1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16)
2. Error: Test risk_ratio returns exected lci (@test-risk.R#21)
3. Error: Test risk_ratio returns exected uci (@test-risk.R#26)
4. Error: Test risk_diff returns exected estimate (@test-risk.R#31)
5. Error: Test risk_diff returns exected lci (@test-risk.R#36)
6. Error: Test risk_diff returns exected uci (@test-risk.R#41)
7. Error: rrmh returns expected value (@test-stratified_risk.R#6)
8. Error: lci return expected value (@test-stratified_risk.R#13)
9. Error: uci return expected value (@test-stratified_risk.R#28)
Error: testthat unit tests failed
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86
Version: 0.4.0
Check: examples
Result: ERROR
Running examples in 'episheet-Ex.R' failed
The error most likely occurred in:
> ### Name: risk
> ### Title: Calculate risk ratio and risk difference
> ### Aliases: risk
>
> ### ** Examples
>
> # Data from stratum 1 of table 15-1., p260
> dat <- data.frame(
+ exposure_var = c(rep(1, 8), rep(0, 5), rep(1, 98), rep(0, 115)),
+ outcome_var = c(rep(1, 8), rep(1, 5), rep(0, 98), rep(0, 115)),
+ stringsAsFactors = FALSE
+ )
> risk(data = dat, exposure = exposure_var, outcome = outcome_var)
Error: Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
x
1. \-episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
2. \-`%>%`(...)
3. +-base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
4. \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
5. \-base::eval(quote(`_fseq`(`_lhs`)), env, env)
6. \-episheet:::`_fseq`(`_lhs`)
7. \-magrittr::freduce(value, `_function_list`)
8. \-function_list[[i]](value)
9. +-dplyr::summarise(., n = n())
10. \-dplyr:::summarise.data.frame(., n = n())
11. \-dplyr:::summarise_cols(.data, ...)
<parent: error/simpleError>
Backtrace:
x
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(episheet)
>
> test_check("episheet")
-- 1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16) -------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 2. Error: Test risk_ratio returns exected lci (@test-risk.R#21) ------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 3. Error: Test risk_ratio returns exected uci (@test-risk.R#26) ------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 4. Error: Test risk_diff returns exected estimate (@test-risk.R#31) --------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 5. Error: Test risk_diff returns exected lci (@test-risk.R#36) -------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 6. Error: Test risk_diff returns exected uci (@test-risk.R#41) -------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 7. Error: rrmh returns expected value (@test-stratified_risk.R#6) ----------
Problem with `summarise()` input `Ts`.
x could not find function "n"
i Input `Ts` is `n()`.
i The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
-- 8. Error: lci return expected value (@test-stratified_risk.R#13) -----------
Problem with `summarise()` input `Ts`.
x could not find function "n"
i Input `Ts` is `n()`.
i The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
-- 9. Error: uci return expected value (@test-stratified_risk.R#28) -----------
Problem with `summarise()` input `Ts`.
x could not find function "n"
i Input `Ts` is `n()`.
i The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
== testthat results ===========================================================
[ OK: 6 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ]
1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16)
2. Error: Test risk_ratio returns exected lci (@test-risk.R#21)
3. Error: Test risk_ratio returns exected uci (@test-risk.R#26)
4. Error: Test risk_diff returns exected estimate (@test-risk.R#31)
5. Error: Test risk_diff returns exected lci (@test-risk.R#36)
6. Error: Test risk_diff returns exected uci (@test-risk.R#41)
7. Error: rrmh returns expected value (@test-stratified_risk.R#6)
8. Error: lci return expected value (@test-stratified_risk.R#13)
9. Error: uci return expected value (@test-stratified_risk.R#28)
Error: testthat unit tests failed
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(episheet)
>
> test_check("episheet")
── 1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16) ───────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 2. Error: Test risk_ratio returns exected lci (@test-risk.R#21) ────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 3. Error: Test risk_ratio returns exected uci (@test-risk.R#26) ────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 4. Error: Test risk_diff returns exected estimate (@test-risk.R#31) ────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 5. Error: Test risk_diff returns exected lci (@test-risk.R#36) ─────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 6. Error: Test risk_diff returns exected uci (@test-risk.R#41) ─────────────
Problem with `summarise()` input `n`.
✖ could not find function "n"
ℹ Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
── 7. Error: rrmh returns expected value (@test-stratified_risk.R#6) ──────────
Problem with `summarise()` input `Ts`.
✖ could not find function "n"
ℹ Input `Ts` is `n()`.
ℹ The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
── 8. Error: lci return expected value (@test-stratified_risk.R#13) ───────────
Problem with `summarise()` input `Ts`.
✖ could not find function "n"
ℹ Input `Ts` is `n()`.
ℹ The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
── 9. Error: uci return expected value (@test-stratified_risk.R#28) ───────────
Problem with `summarise()` input `Ts`.
✖ could not find function "n"
ℹ Input `Ts` is `n()`.
ℹ The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 6 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ]
1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16)
2. Error: Test risk_ratio returns exected lci (@test-risk.R#21)
3. Error: Test risk_ratio returns exected uci (@test-risk.R#26)
4. Error: Test risk_diff returns exected estimate (@test-risk.R#31)
5. Error: Test risk_diff returns exected lci (@test-risk.R#36)
6. Error: Test risk_diff returns exected uci (@test-risk.R#41)
7. Error: rrmh returns expected value (@test-stratified_risk.R#6)
8. Error: lci return expected value (@test-stratified_risk.R#13)
9. Error: uci return expected value (@test-stratified_risk.R#28)
Error: testthat unit tests failed
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(episheet)
>
> test_check("episheet")
-- 1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16) -------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 2. Error: Test risk_ratio returns exected lci (@test-risk.R#21) ------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 3. Error: Test risk_ratio returns exected uci (@test-risk.R#26) ------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 4. Error: Test risk_diff returns exected estimate (@test-risk.R#31) --------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 5. Error: Test risk_diff returns exected lci (@test-risk.R#36) -------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 6. Error: Test risk_diff returns exected uci (@test-risk.R#41) -------------
Problem with `summarise()` input `n`.
x could not find function "n"
i Input `n` is `n()`.
Backtrace:
1. testthat::expect_equal(...)
4. episheet::risk(data = dat, exposure = exposure_var, outcome = outcome_var)
3. dplyr::filter(., !!exposure == 1 & !!outcome == 1)
10. dplyr::summarise(., n = n())
14. dplyr:::summarise_cols(.data, ...)
-- 7. Error: rrmh returns expected value (@test-stratified_risk.R#6) ----------
Problem with `summarise()` input `Ts`.
x could not find function "n"
i Input `Ts` is `n()`.
i The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
-- 8. Error: lci return expected value (@test-stratified_risk.R#13) -----------
Problem with `summarise()` input `Ts`.
x could not find function "n"
i Input `Ts` is `n()`.
i The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
-- 9. Error: uci return expected value (@test-stratified_risk.R#28) -----------
Problem with `summarise()` input `Ts`.
x could not find function "n"
i Input `Ts` is `n()`.
i The error occured in group 1: age = "<55y".
Backtrace:
1. testthat::expect_equal(...)
4. episheet::stratified_risk(...)
3. dplyr::group_by(., !!stratifier)
10. dplyr::summarise(., Ts = n(), Tc = sum(!!outcome))
14. dplyr:::summarise_cols(.data, ...)
== testthat results ===========================================================
[ OK: 6 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ]
1. Error: Test risk_ratio returns exected estimate (@test-risk.R#16)
2. Error: Test risk_ratio returns exected lci (@test-risk.R#21)
3. Error: Test risk_ratio returns exected uci (@test-risk.R#26)
4. Error: Test risk_diff returns exected estimate (@test-risk.R#31)
5. Error: Test risk_diff returns exected lci (@test-risk.R#36)
6. Error: Test risk_diff returns exected uci (@test-risk.R#41)
7. Error: rrmh returns expected value (@test-stratified_risk.R#6)
8. Error: lci return expected value (@test-stratified_risk.R#13)
9. Error: uci return expected value (@test-stratified_risk.R#28)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64