Last updated on 2020-06-16 06:47:32 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 26.04 | 172.25 | 198.29 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 21.64 | 133.12 | 154.76 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 245.06 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 237.32 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.1.0 | 55.00 | 233.00 | 288.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.0 | 25.42 | 170.37 | 195.79 | NOTE | |
| r-release-linux-x86_64 | 1.1.0 | 24.86 | 171.97 | 196.83 | NOTE | |
| r-release-osx-x86_64 | 1.1.0 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.1.0 | 63.00 | 247.00 | 310.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.1.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.0 | 56.00 | 163.00 | 219.00 | NOTE |
Version: 1.1.0
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: 'methods'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.0
Check: R code for possible problems
Result: NOTE
assignParalogues: no visible global function definition for 'quantile'
assignToAlleleSet: no visible global function definition for 'as'
assignToAlleleSet: no visible global function definition for 'new'
assignToAlleleSet: no visible global function definition for
'validObject'
callGenotypes: no visible global function definition for 'median'
callGenotypes: no visible global function definition for 'quantile'
callGenotypes: no visible binding for global variable 'sd'
callGenotypes: no visible binding for global variable 'median'
callGenotypes: no visible global function definition for 'pf'
callGenotypes: no visible global function definition for 'plot.new'
callGenotypes: no visible global function definition for 'plot.window'
callGenotypes: no visible global function definition for 'axis'
callGenotypes: no visible global function definition for 'points'
callGenotypes: no visible global function definition for 'new'
callGenotypes: no visible global function definition for 'validObject'
callGenotypes.interactive: no visible global function definition for
'new'
callGenotypes.interactive: no visible global function definition for
'median'
callGenotypes.interactive: no visible global function definition for
'quantile'
callGenotypes.interactive: no visible binding for global variable
'median'
callGenotypes.interactive: no visible binding for global variable 'sd'
callGenotypes.interactive: no visible global function definition for
'pf'
callGenotypes.interactive: no visible global function definition for
'validObject'
callGenotypes.verboseTest: no visible global function definition for
'median'
callGenotypes.verboseTest: no visible global function definition for
'quantile'
callGenotypes.verboseTest: no visible global function definition for
'par'
callGenotypes.verboseTest: no visible binding for global variable 'sd'
callGenotypes.verboseTest: no visible binding for global variable
'median'
callGenotypes.verboseTest: no visible global function definition for
'pf'
callGenotypes.verboseTest: no visible global function definition for
'plot.new'
callGenotypes.verboseTest: no visible global function definition for
'plot.window'
callGenotypes.verboseTest: no visible global function definition for
'axis'
callGenotypes.verboseTest: no visible global function definition for
'title'
callGenotypes.verboseTest: no visible global function definition for
'points'
countFailedSNP: no visible global function definition for 'new'
countFailedSNP: no visible global function definition for 'validObject'
createAlleleSet: no visible global function definition for 'new'
createAlleleSet: no visible global function definition for
'validObject'
createAlleleSetFromFiles: no visible global function definition for
'read.table'
createAlleleSetFromFiles: no visible global function definition for
'new'
createAlleleSetFromFiles: no visible global function definition for
'validObject'
createMultiSetFromFiles: no visible global function definition for
'read.table'
createMultiSetFromFiles: no visible global function definition for
'new'
createMultiSetFromFiles: no visible global function definition for
'validObject'
findClusters: no visible global function definition for 'hist'
findClusters: no visible global function definition for 'embed'
findPolyploidClusters: no visible global function definition for 'hist'
findPolyploidClusters: no visible global function definition for
'median'
findPolyploidClusters: no visible global function definition for
'kmeans'
findPolyploidClusters: no visible binding for global variable 'median'
findSeTheta: no visible global function definition for 'integrate'
getNoiseDistributions: no visible global function definition for 'par'
getNoiseDistributions: no visible binding for global variable 'median'
getNoiseDistributions: no visible binding for global variable 'mad'
getNoiseDistributions: no visible global function definition for 'hist'
getNoiseDistributions: no visible global function definition for
'lines'
getNoiseDistributions: no visible global function definition for
'dnorm'
normalizeIllumina: no visible global function definition for 'quantile'
normalizeIllumina: no visible global function definition for 'coef'
normalizeIllumina: no visible global function definition for 'lm'
normalizeIllumina: no visible global function definition for 'points'
normalizeIllumina: no visible global function definition for 'par'
normalizeIllumina: no visible global function definition for 'plot.new'
normalizeIllumina: no visible global function definition for
'plot.window'
normalizeIllumina: no visible global function definition for 'axis'
normalizeIllumina: no visible global function definition for 'lines'
normalizeShearedChannels: no visible binding for global variable
'median'
normalizeShearedChannels: no visible binding for global variable
'quantile'
plotCountsChrom: no visible global function definition for 'par'
plotCountsChrom: no visible global function definition for 'plot.new'
plotCountsChrom: no visible global function definition for
'plot.window'
plotCountsChrom: no visible global function definition for 'axis'
plotCountsChrom: no visible global function definition for 'lines'
plotCountsChrom: no visible global function definition for 'title'
plotEstimatedNoise: no visible global function definition for 'par'
plotEstimatedNoise: no visible global function definition for 'lines'
plotEstimatedNoise: no visible global function definition for 'points'
plotGenotypes: no visible global function definition for 'par'
plotGenotypes: no visible global function definition for 'palette'
plotGenotypes: no visible global function definition for 'plot.new'
plotGenotypes: no visible global function definition for 'plot.window'
plotGenotypes: no visible global function definition for 'axis'
plotGenotypes: no visible global function definition for 'points'
plotGenotypes: no visible global function definition for 'title'
plotGenotypes: no visible global function definition for 'lines'
plotPreprocessing: no visible global function definition for 'par'
preprocessBeadSet: no visible global function definition for 'new'
preprocessBeadSet: no visible global function definition for
'validObject'
readBeadSummaryOutput: no visible global function definition for 'new'
scatterArrays: no visible global function definition for 'par'
scatterArrays: no visible global function definition for
'smoothScatter'
scatterArrays: no visible global function definition for 'lines'
shearRawSignal: no visible global function definition for 'par'
shearRawSignal: no visible global function definition for 'validObject'
testHardyWeinberg: no visible global function definition for 'pchisq'
translateThetaCombined: no visible global function definition for
'validObject'
translateThetaFromFiles: no visible global function definition for
'read.table'
translateThetaFromFiles: no visible global function definition for
'new'
translateThetaFromFiles: no visible global function definition for 'as'
translateThetaFromFiles: no visible global function definition for
'write.table'
validateCallsPedigree: no visible global function definition for 'new'
validateCallsPedigree: no visible global function definition for
'validObject'
writeAlleleSet: no visible global function definition for 'write.table'
initialize,AlleleSetIllumina: no visible global function definition for
'new'
initialize,AlleleSetIllumina: no visible global function definition for
'callNextMethod'
initialize,BeadSetIllumina: no visible global function definition for
'new'
initialize,BeadSetIllumina: no visible global function definition for
'callNextMethod'
Undefined global functions or variables:
as axis callNextMethod coef dnorm embed hist integrate kmeans lines
lm mad median new palette par pchisq pf plot.new plot.window points
quantile read.table sd smoothScatter title validObject write.table
Consider adding
importFrom("grDevices", "palette")
importFrom("graphics", "axis", "hist", "lines", "par", "plot.new",
"plot.window", "points", "smoothScatter", "title")
importFrom("methods", "as", "callNextMethod", "new", "validObject")
importFrom("stats", "coef", "dnorm", "embed", "integrate", "kmeans",
"lm", "mad", "median", "pchisq", "pf", "quantile", "sd")
importFrom("utils", "read.table", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 8.2Mb
sub-directories of 1Mb or more:
data 6.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘rggobi’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 1.1.0
Check: R code for possible problems
Result: NOTE
assignParalogues: no visible global function definition for 'quantile'
assignToAlleleSet: no visible global function definition for 'as'
assignToAlleleSet: no visible global function definition for 'new'
assignToAlleleSet: no visible global function definition for
'validObject'
callGenotypes: no visible global function definition for 'median'
callGenotypes: no visible global function definition for 'quantile'
callGenotypes: no visible binding for global variable 'sd'
callGenotypes: no visible binding for global variable 'median'
callGenotypes: no visible global function definition for 'pf'
callGenotypes: no visible global function definition for 'plot.new'
callGenotypes: no visible global function definition for 'plot.window'
callGenotypes: no visible global function definition for 'axis'
callGenotypes: no visible global function definition for 'points'
callGenotypes: no visible global function definition for 'new'
callGenotypes: no visible global function definition for 'validObject'
callGenotypes.interactive: no visible global function definition for
'new'
callGenotypes.interactive: no visible global function definition for
'median'
callGenotypes.interactive: no visible global function definition for
'quantile'
callGenotypes.interactive: no visible binding for global variable
'median'
callGenotypes.interactive: no visible binding for global variable 'sd'
callGenotypes.interactive: no visible global function definition for
'pf'
callGenotypes.interactive: no visible global function definition for
'validObject'
callGenotypes.verboseTest: no visible global function definition for
'median'
callGenotypes.verboseTest: no visible global function definition for
'quantile'
callGenotypes.verboseTest: no visible global function definition for
'par'
callGenotypes.verboseTest: no visible binding for global variable 'sd'
callGenotypes.verboseTest: no visible binding for global variable
'median'
callGenotypes.verboseTest: no visible global function definition for
'pf'
callGenotypes.verboseTest: no visible global function definition for
'plot.new'
callGenotypes.verboseTest: no visible global function definition for
'plot.window'
callGenotypes.verboseTest: no visible global function definition for
'axis'
callGenotypes.verboseTest: no visible global function definition for
'title'
callGenotypes.verboseTest: no visible global function definition for
'points'
countFailedSNP: no visible global function definition for 'new'
countFailedSNP: no visible global function definition for 'validObject'
createAlleleSet: no visible global function definition for 'new'
createAlleleSet: no visible global function definition for
'validObject'
createAlleleSetFromFiles: no visible global function definition for
'read.table'
createAlleleSetFromFiles: no visible global function definition for
'new'
createAlleleSetFromFiles: no visible global function definition for
'validObject'
createMultiSetFromFiles: no visible global function definition for
'read.table'
createMultiSetFromFiles: no visible global function definition for
'new'
createMultiSetFromFiles: no visible global function definition for
'validObject'
findClusters: no visible global function definition for 'hist'
findClusters: no visible global function definition for 'embed'
findPolyploidClusters: no visible global function definition for 'hist'
findPolyploidClusters: no visible global function definition for
'median'
findPolyploidClusters: no visible global function definition for
'kmeans'
findPolyploidClusters: no visible binding for global variable 'median'
findSeTheta: no visible global function definition for 'integrate'
getNoiseDistributions: no visible global function definition for 'par'
getNoiseDistributions: no visible binding for global variable 'median'
getNoiseDistributions: no visible binding for global variable 'mad'
getNoiseDistributions: no visible global function definition for 'hist'
getNoiseDistributions: no visible global function definition for
'lines'
getNoiseDistributions: no visible global function definition for
'dnorm'
normalizeIllumina: no visible global function definition for 'quantile'
normalizeIllumina: no visible global function definition for 'coef'
normalizeIllumina: no visible global function definition for 'lm'
normalizeIllumina: no visible global function definition for 'points'
normalizeIllumina: no visible global function definition for 'par'
normalizeIllumina: no visible global function definition for 'plot.new'
normalizeIllumina: no visible global function definition for
'plot.window'
normalizeIllumina: no visible global function definition for 'axis'
normalizeIllumina: no visible global function definition for 'lines'
normalizeShearedChannels: no visible binding for global variable
'median'
normalizeShearedChannels: no visible binding for global variable
'quantile'
plotCountsChrom: no visible global function definition for 'par'
plotCountsChrom: no visible global function definition for 'plot.new'
plotCountsChrom: no visible global function definition for
'plot.window'
plotCountsChrom: no visible global function definition for 'axis'
plotCountsChrom: no visible global function definition for 'lines'
plotCountsChrom: no visible global function definition for 'title'
plotEstimatedNoise: no visible global function definition for 'par'
plotEstimatedNoise: no visible global function definition for 'plot'
plotEstimatedNoise: no visible global function definition for 'lines'
plotEstimatedNoise: no visible global function definition for 'points'
plotGenotypes: no visible global function definition for 'par'
plotGenotypes: no visible global function definition for 'palette'
plotGenotypes: no visible global function definition for 'plot.new'
plotGenotypes: no visible global function definition for 'plot.window'
plotGenotypes: no visible global function definition for 'axis'
plotGenotypes: no visible global function definition for 'points'
plotGenotypes: no visible global function definition for 'title'
plotGenotypes: no visible global function definition for 'lines'
plotPreprocessing: no visible global function definition for 'par'
preprocessBeadSet: no visible global function definition for 'new'
preprocessBeadSet: no visible global function definition for
'validObject'
readBeadSummaryOutput: no visible global function definition for 'new'
scatterArrays: no visible global function definition for 'par'
scatterArrays: no visible global function definition for
'smoothScatter'
scatterArrays: no visible global function definition for 'plot'
scatterArrays: no visible global function definition for 'lines'
shearRawSignal: no visible global function definition for 'par'
shearRawSignal: no visible global function definition for 'validObject'
testHardyWeinberg: no visible global function definition for 'pchisq'
translateThetaCombined: no visible global function definition for
'validObject'
translateThetaFromFiles: no visible global function definition for
'read.table'
translateThetaFromFiles: no visible global function definition for
'new'
translateThetaFromFiles: no visible global function definition for 'as'
translateThetaFromFiles: no visible global function definition for
'write.table'
validateCallsPedigree: no visible global function definition for 'new'
validateCallsPedigree: no visible global function definition for
'validObject'
writeAlleleSet: no visible global function definition for 'write.table'
initialize,AlleleSetIllumina: no visible global function definition for
'new'
initialize,AlleleSetIllumina: no visible global function definition for
'callNextMethod'
initialize,BeadSetIllumina: no visible global function definition for
'new'
initialize,BeadSetIllumina: no visible global function definition for
'callNextMethod'
Undefined global functions or variables:
as axis callNextMethod coef dnorm embed hist integrate kmeans lines
lm mad median new palette par pchisq pf plot plot.new plot.window
points quantile read.table sd smoothScatter title validObject
write.table
Consider adding
importFrom("grDevices", "palette")
importFrom("graphics", "axis", "hist", "lines", "par", "plot",
"plot.new", "plot.window", "points", "smoothScatter",
"title")
importFrom("methods", "as", "callNextMethod", "new", "validObject")
importFrom("stats", "coef", "dnorm", "embed", "integrate", "kmeans",
"lm", "mad", "median", "pchisq", "pf", "quantile", "sd")
importFrom("utils", "read.table", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Flavor: r-oldrel-windows-ix86+x86_64