Last updated on 2020-09-14 11:07:45 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 23.02 | 309.02 | 332.04 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 18.48 | 108.09 | 126.57 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 437.81 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 215.72 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.0.0 | 36.00 | 108.00 | 144.00 | NOTE | --no-vignettes |
| r-patched-linux-x86_64 | 1.0.0 | 20.57 | 302.53 | 323.10 | NOTE | |
| r-release-linux-x86_64 | 1.0.0 | 18.93 | 289.03 | 307.96 | NOTE | |
| r-release-macos-x86_64 | 1.0.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.0.0 | 31.00 | 144.00 | 175.00 | NOTE | --no-vignettes |
| r-oldrel-macos-x86_64 | 1.0.0 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.0 | 27.00 | 137.00 | 164.00 | NOTE | --no-vignettes |
Version: 1.0.0
Check: R code for possible problems
Result: NOTE
MSIseq.classify: no visible global function definition for 'predict'
Undefined global functions or variables:
predict
Consider adding
importFrom("stats", "predict")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘MSIseq.Rnw’ using Sweave
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: RWeka
Loading required package: rJava
Loading required package: R.utils
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.8.1 (2020-08-26 16:20:06 UTC) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.24.0 (2020-08-26 16:11:58 UTC) successfully loaded. See ?R.oo for help.
Attaching package: ‘R.oo’
The following object is masked from ‘package:R.methodsS3’:
throw
The following object is masked from ‘package:rJava’:
clone
The following object is masked from ‘package:IRanges’:
trim
The following objects are masked from ‘package:methods’:
getClasses, getMethods
The following objects are masked from ‘package:base’:
attach, detach, load, save
R.utils v2.10.1 (2020-08-26 22:50:31 UTC) successfully loaded. See ?R.utils for help.
Attaching package: ‘R.utils’
The following object is masked from ‘package:utils’:
timestamp
The following objects are masked from ‘package:base’:
cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
warnings
trying URL ‘http://steverozen.net/data/Hg19repeats.rda’
Content type 'unknown' length 66808496 bytes (63.7 MB)
=========
downloaded 11.5 MB
Warning in download.file(url, file) :
downloaded length 12050009 != reported length 66808496
Warning in download.file(url, file) :
URL 'http://steverozen.net/data/Hg19repeats.rda': status was 'Timeout was reached'
Error: processing vignette 'MSIseq.Rnw' failed with diagnostics:
chunk 3 (label = Hg19repeats)
Error in download.file(url, file) :
download from 'http://steverozen.net/data/Hg19repeats.rda' failed
--- failed re-building ‘MSIseq.Rnw’
SUMMARY: processing the following file failed:
‘MSIseq.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘MSIseq.Rnw’ using Sweave
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: RWeka
Loading required package: rJava
Loading required package: R.utils
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.8.1 (2020-08-26 16:20:06 UTC) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.24.0 (2020-08-26 16:11:58 UTC) successfully loaded. See ?R.oo for help.
Attaching package: ‘R.oo’
The following object is masked from ‘package:R.methodsS3’:
throw
The following object is masked from ‘package:rJava’:
clone
The following object is masked from ‘package:IRanges’:
trim
The following objects are masked from ‘package:methods’:
getClasses, getMethods
The following objects are masked from ‘package:base’:
attach, detach, load, save
R.utils v2.10.1 (2020-08-26 22:50:31 UTC) successfully loaded. See ?R.utils for help.
Attaching package: ‘R.utils’
The following object is masked from ‘package:utils’:
timestamp
The following objects are masked from ‘package:base’:
cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
warnings
trying URL 'http://steverozen.net/data/Hg19repeats.rda'
Content type 'unknown' length 66808496 bytes (63.7 MB)
==============================
downloaded 39.2 MB
Warning in download.file(url, file) :
downloaded length 41122057 != reported length 66808496
Warning in download.file(url, file) :
URL 'http://steverozen.net/data/Hg19repeats.rda': status was 'Timeout was reached'
Error: processing vignette 'MSIseq.Rnw' failed with diagnostics:
chunk 3 (label = Hg19repeats)
Error in download.file(url, file) :
download from 'http://steverozen.net/data/Hg19repeats.rda' failed
--- failed re-building ‘MSIseq.Rnw’
SUMMARY: processing the following file failed:
‘MSIseq.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
MSIseq.classify: no visible global function definition for 'predict'
Undefined global functions or variables:
predict
Consider adding
importFrom("stats", "predict")
to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: package ‘IRanges’ was built under R version 3.6.1
Warning: package ‘S4Vectors’ was built under R version 3.6.1
Flavor: r-oldrel-macos-x86_64