Last updated on 2020-09-16 08:05:15 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 9.46 | 94.65 | 104.11 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 8.47 | 78.81 | 87.28 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 156.93 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 139.95 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.1.1 | 22.00 | 168.00 | 190.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.1 | 8.99 | 106.99 | 115.98 | OK | |
| r-patched-solaris-x86 | 1.1.1 | 183.60 | NOTE | |||
| r-release-linux-x86_64 | 1.1.1 | 8.94 | 105.94 | 114.88 | OK | |
| r-release-macos-x86_64 | 1.1.1 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.1.1 | 22.00 | 185.00 | 207.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.1.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.1 | 22.00 | 158.00 | 180.00 | ERROR |
Version: 1.1.1
Check: examples
Result: ERROR
Running examples in 'covid19.analytics-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: covid19.genomic.data
> ### Title: function to obtain sequencing data grom NCBI Reference:
> ### https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2
> ### Aliases: covid19.genomic.data
>
> ### ** Examples
>
> # obtain covid19's genomic data
> covid19.gen.seq <- covid19.genomic.data()
Loading required package: ape
Retrieving data from NCBI...
Warning in file(file, "r") :
cannot open URL 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=NC_045512.2&rettype=fasta&retmode=text': HTTP status was '502 Bad Gateway'
Error in file(file, "r") :
cannot open the connection to 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=NC_045512.2&rettype=fasta&retmode=text'
Calls: covid19.genomic.data -> read.GenBank -> scan -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.1
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 1.0Mb
extdata 4.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.1
Check: examples
Result: ERROR
Running examples in 'covid19.analytics-Ex.R' failed
The error most likely occurred in:
> ### Name: covid19.genomic.data
> ### Title: function to obtain sequencing data grom NCBI Reference:
> ### https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2
> ### Aliases: covid19.genomic.data
>
> ### ** Examples
>
> # obtain covid19's genomic data
> covid19.gen.seq <- covid19.genomic.data()
Loading required package: ape
Retrieving data from NCBI...
Warning in file(file, "r") :
InternetOpenUrl failed: 'Die Serververbindung konnte nicht hergestellt werden.'
Error in file(file, "r") : cannot open the connection
Calls: covid19.genomic.data -> read.GenBank -> scan -> file
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64