Last updated on 2020-09-21 16:07:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.2 | 399.29 | 209.31 | 608.60 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.2.2 | 344.12 | 169.48 | 513.60 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2.2 | 884.50 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.2 | 845.51 | NOTE | |||
| r-patched-solaris-x86 | 1.2.2 | 768.40 | ERROR | |||
| r-release-linux-x86_64 | 1.2.2 | 355.54 | 216.44 | 571.98 | NOTE | |
| r-release-macos-x86_64 | 1.2.2 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.2.2 | 671.00 | 384.00 | 1055.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.2.2 | ERROR |
Version: 1.2.2
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64
Version: 1.2.2
Check: installed package size
Result: NOTE
installed size is 78.4Mb
sub-directories of 1Mb or more:
libs 77.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64
Version: 1.2.2
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘RcppParallel’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [168s/229s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(rmdcev)
Loading required package: Rcpp
This is rmdcev version 1.2.2
> test_check("rmdcev")
SAMPLING FOR MODEL 'mdcev' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.02 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 200 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.74 seconds (Warm-up)
Chain 1: 0.17 seconds (Sampling)
Chain 1: 0.91 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'mdcev' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.01 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 100 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.09 seconds (Warm-up)
Chain 1: 0.1 seconds (Sampling)
Chain 1: 0.19 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'mdcev_rp' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.01 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 100 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 2.79 seconds (Warm-up)
Chain 1: 0.15 seconds (Sampling)
Chain 1: 2.94 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'mdcev_rp' NOW (CHAIN 1).
Chain 1: Rejecting initial value:
Chain 1: Log probability evaluates to log(0), i.e. negative infinity.
Chain 1: Stan can't start sampling from this initial value.
Chain 1: Rejecting initial value:
Chain 1: Log probability evaluates to log(0), i.e. negative infinity.
Chain 1: Stan can't start sampling from this initial value.
Chain 1: Rejecting initial value:
Chain 1: Log probability evaluates to log(0), i.e. negative infinity.
Chain 1: Stan can't start sampling from this initial value.
Chain 1:
Chain 1: Gradient evaluation took 0.01 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 100 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 4.2 seconds (Warm-up)
Chain 1: 0.32 seconds (Sampling)
Chain 1: 4.52 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'mdcev_rp' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.47 seconds (Warm-up)
Chain 1: 0.26 seconds (Sampling)
Chain 1: 0.73 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'mdcev' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.15 seconds (Warm-up)
Chain 1: 0.07 seconds (Sampling)
Chain 1: 0.22 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'mdcev_rp' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.01 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 100 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.08 seconds (Warm-up)
Chain 1: 0.08 seconds (Sampling)
Chain 1: 0.16 seconds (Total)
Chain 1:
[1] -2653.237037
[1] 5467.65503
[1] -2770.001937
[1] -5073.714821
[1] 39 0 2 0 0 45 0 279 0 0 0 0 0 0 0 0 0
[1] 29.76689758
── 1. Failure: Conditional error hybrid draw (@test-simulations.R#209) ────────
abs(util - 29.56664) < tol isn't true.
[,1]
[1,] -41.67031269
── 2. Failure: Conditional error hybrid draw (@test-simulations.R#218) ────────
abs(wtp_err - (-41.56801)) < tol isn't true.
[,1]
[1,] -41.67031269
── 3. Failure: Conditional error hybrid draw (@test-simulations.R#225) ────────
abs(wtp_err - (-41.56801)) < tol isn't true.
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 81 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Failure: Conditional error hybrid draw (@test-simulations.R#209)
2. Failure: Conditional error hybrid draw (@test-simulations.R#218)
3. Failure: Conditional error hybrid draw (@test-simulations.R#225)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 19 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 27 ]
1. Error: Bayes gamma uncorr specification (@test-bayes.R#95)
2. Error: Bayes gamma corr specification (@test-bayes.R#126)
3. Error: Bayes gamma corr specification with fixed gamma/alpha (@test-bayes.R#159)
4. Error: Test Bayes kt_ee rp fixed (@test-bayes.R#192)
5. Error: Test Bayes kt_ee rp uncorrelated (@test-bayes.R#215)
6. Error: MLE hybrid0 (@test-choice.R#38)
7. Error: MLE hybrid0 mvn draws (@test-choice.R#61)
8. Error: MLE hybrid (@test-choice.R#79)
9. Error: MLE gamma (@test-choice.R#93)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-macos-x86_64