Last updated on 2020-10-13 05:49:15 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 36.70 | 318.81 | 355.51 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 30.64 | 239.54 | 270.18 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 460.86 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 427.52 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.0 | 80.00 | 281.00 | 361.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0 | 27.38 | 290.05 | 317.43 | ERROR | |
| r-patched-solaris-x86 | 1.0 | 600.40 | ERROR | |||
| r-release-linux-x86_64 | 1.0 | 37.55 | 289.96 | 327.51 | OK | |
| r-release-macos-x86_64 | 1.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.0 | 65.00 | 355.00 | 420.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0 | 73.00 | 292.00 | 365.00 | NOTE |
Version: 1.0
Check: examples
Result: ERROR
Running examples in 'STRAH-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: motif_detection
> ### Title: DNA-motif detection in a given DNAStringSet, a given
> ### DNA-sequence in fasta-format, or a specified region of any genome
> ### Aliases: motif_detection
> ### Keywords: array datasets list methods univar
>
> ### ** Examples
>
> data(chr6_1580213_1582559)
> motif_detection(seqName = chr6_1580213_1582559, start.position = NA, end.position = NA,
+ motif = "CCNCCNTNNCCNC", nr.mismatch = 1, reverse.comp = FALSE, print.status = FALSE)
Error in as.character.default(new("BSgenome", pkgname = "BSgenome.Hsapiens.UCSC.hg19", :
no method for coercing this S4 class to a vector
Calls: motif_detection ... toString.default -> paste -> as.character -> as.character.default
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘BSgenome’ ‘BiocManager’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64
Version: 1.0
Check: examples
Result: ERROR
Running examples in ‘STRAH-Ex.R’ failed
The error most likely occurred in:
> ### Name: motif_detection
> ### Title: DNA-motif detection in a given DNAStringSet, a given
> ### DNA-sequence in fasta-format, or a specified region of any genome
> ### Aliases: motif_detection
> ### Keywords: array datasets list methods univar
>
> ### ** Examples
>
> data(chr6_1580213_1582559)
> motif_detection(seqName = chr6_1580213_1582559, start.position = NA, end.position = NA,
+ motif = "CCNCCNTNNCCNC", nr.mismatch = 1, reverse.comp = FALSE, print.status = FALSE)
Error in as.character.default(new("BSgenome", pkgname = "BSgenome.Hsapiens.UCSC.hg19", :
no method for coercing this S4 class to a vector
Calls: motif_detection ... toString.default -> paste -> as.character -> as.character.default
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86
Version: 1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'BSgenome.Ptroglodytes.UCSC.panTro5'
Flavors: r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘BSgenome.Hsapiens.UCSC.hg19’
Package suggested but not available for checking: ‘BSgenome.Ptroglodytes.UCSC.panTro5’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64