Last updated on 2020-10-28 18:50:03 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 10.64 | 50.49 | 61.13 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 6.44 | 38.73 | 45.17 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 81.60 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 72.77 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.0 | 20.00 | 92.00 | 112.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0 | NOTE | ||||
| r-patched-solaris-x86 | 1.0 | 93.90 | NOTE | |||
| r-release-linux-x86_64 | 1.0 | 8.56 | 46.64 | 55.20 | NOTE | |
| r-release-macos-x86_64 | 1.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.0 | 15.00 | 71.00 | 86.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0 | 18.00 | 104.00 | 122.00 | NOTE |
Version: 1.0
Check: for hidden files and directories
Result: NOTE
Found the following hidden files and directories:
.Rbuildindex.10034
.Rbuildindex.31551
.Rbuildindex.31678
.Rbuildindex.9995
inst/doc/.fr-hy2VZf
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: 'Biobase'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: R code for possible problems
Result: NOTE
AUC.calc: no visible global function definition for 'median'
ROC.graphic.ktsp: no visible global function definition for 'layout'
ROC.graphic.ktsp: no visible global function definition for 'par'
ROC.graphic.ktsp: no visible global function definition for 'axis'
ROC.graphic.ktsp: no visible global function definition for 'abline'
ROC.graphic.ktsp: no visible global function definition for 'points'
ROC.graphic.ktsp: no visible global function definition for 'lines'
ROC.graphic.ktsp: no visible global function definition for 'legend'
ROC.graphic.ktsp: no visible global function definition for 'title'
ROC.offset: no visible global function definition for 'pData'
ROC.offset: no visible global function definition for 'exprs'
ROC.voting: no visible global function definition for 'pData'
ROC.voting: no visible global function definition for 'exprs'
ROC.voting: no visible global function definition for 'predict'
bootstrap.graphic.ktsp: no visible global function definition for
'layout'
bootstrap.graphic.ktsp: no visible global function definition for 'par'
bootstrap.graphic.ktsp: no visible global function definition for
'text'
bootstrap.graphic.ktsp: no visible global function definition for
'points'
bootstrap.graphic.ktsp: no visible global function definition for
'hist'
bootstrap.graphic.ktsp: no visible global function definition for
'axis'
bootstrap.ktsp: no visible global function definition for 'exprs'
bootstrap.ktsp: no visible global function definition for
'featureNames'
bootstrap.ktsp: no visible global function definition for 'pData'
cv: no visible global function definition for 'predict'
cv2: no visible global function definition for 'predict'
kts.pair : <anonymous>: no visible global function definition for
'median'
ktspcalc: no visible global function definition for 'exprs'
ktspcalc: no visible global function definition for 'featureNames'
ktspcalc: no visible global function definition for 'pData'
ktspcalc2: no visible global function definition for 'exprs'
ktspcalc2: no visible global function definition for 'featureNames'
ktspcalc2: no visible global function definition for 'pData'
ktspcalc2 : <anonymous>: no visible global function definition for
'median'
ktspcalc2 : <anonymous>: no visible global function definition for
'na.omit'
ktspplot: no visible global function definition for 'par'
ktspplot: no visible global function definition for 'mtext'
ktspplot: no visible global function definition for 'points'
ktspplot: no visible global function definition for 'abline'
predict.ktsp: no visible global function definition for 'featureNames'
predict.ktsp: no visible global function definition for 'exprs'
summary.ktsp: no visible global function definition for 'predict'
Undefined global functions or variables:
abline axis exprs featureNames hist layout legend lines median mtext
na.omit pData par points predict text title
Consider adding
importFrom("graphics", "abline", "axis", "hist", "layout", "legend",
"lines", "mtext", "par", "points", "text", "title")
importFrom("stats", "median", "na.omit", "predict")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64
Version: 1.0
Check: Rd line widths
Result: NOTE
Rd file 'ROC.graphic.ktsp.Rd':
\usage lines wider than 90 characters:
ROC.graphic.ktsp(roc, m = 1, boxplot = TRUE, AUC = TRUE, auc.x = 0.55, auc.y = 0.25, box.col = "yellow", line.col = "red", multiple.col ... [TRUNCATED]
Rd file 'ROC.offset.Rd':
\usage lines wider than 90 characters:
ROC.offset(dat, grp, n = 200, healthy = NULL, seed = NULL, para1 = 200, para2 = 1, mult.cutoff = FALSE, length = 40, display = FALSE, m ... [TRUNCATED]
Rd file 'ROC.voting.Rd':
\usage lines wider than 90 characters:
ROC.voting(dat, grp, n = 200, healthy = NULL, seed = NULL, para1 = 200, para2 = 1, length = 40, display = FALSE, med = FALSE)
Rd file 'bootstrap.ktsp.Rd':
\usage lines wider than 90 characters:
bootstrap.ktsp(dat, grp, k = NULL, seed = NULL, n = 500, length = 40, display = FALSE, med = FALSE)
Rd file 'cv.Rd':
\usage lines wider than 90 characters:
cv(dat, grp, cross = 5, display = FALSE, length = 40, seed = NULL, med = FALSE, healthy = NULL)
Rd file 'cv2.Rd':
\usage lines wider than 90 characters:
cv2(indice, dat, grp, cross = 5, display = FALSE, length = 40, seed = NULL, med = FALSE, healthy = NULL)
Rd file 'ktspcalc.Rd':
\usage lines wider than 90 characters:
ktspcalc(dat, grp, k = NULL, cross = 5, performance = FALSE, healthy = NULL, seed = NULL, display = TRUE, length = 40, med = FALSE)
Rd file 'ktspcalc2.Rd':
\usage lines wider than 90 characters:
ktspcalc2(indice, dat, grp, length = 40, cross =5, display = display, med = FALSE, performance = FALSE, seed = NULL, healthy = NULL)
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0
Check: Rd \usage sections
Result: NOTE
S3 methods shown with full name in documentation object 'predict.ktsp':
'predict.ktsp'
S3 methods shown with full name in documentation object 'print.ktsp':
'print.ktsp'
S3 methods shown with full name in documentation object 'summary.ktsp':
'summary.ktsp'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: compiled code
Result: NOTE
File ‘ktspair/libs/ktspair.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0
Check: R code for possible problems
Result: NOTE
AUC.calc: no visible global function definition for ‘median’
ROC.graphic.ktsp: no visible global function definition for ‘layout’
ROC.graphic.ktsp: no visible global function definition for ‘par’
ROC.graphic.ktsp: no visible global function definition for ‘axis’
ROC.graphic.ktsp: no visible global function definition for ‘abline’
ROC.graphic.ktsp: no visible global function definition for ‘points’
ROC.graphic.ktsp: no visible global function definition for ‘lines’
ROC.graphic.ktsp: no visible global function definition for ‘plot’
ROC.graphic.ktsp: no visible global function definition for ‘legend’
ROC.graphic.ktsp: no visible global function definition for ‘title’
ROC.offset: no visible global function definition for ‘pData’
ROC.offset: no visible global function definition for ‘exprs’
ROC.voting: no visible global function definition for ‘pData’
ROC.voting: no visible global function definition for ‘exprs’
ROC.voting: no visible global function definition for ‘predict’
bootstrap.graphic.ktsp: no visible global function definition for
‘layout’
bootstrap.graphic.ktsp: no visible global function definition for ‘par’
bootstrap.graphic.ktsp: no visible global function definition for
‘plot’
bootstrap.graphic.ktsp: no visible global function definition for
‘text’
bootstrap.graphic.ktsp: no visible global function definition for
‘points’
bootstrap.graphic.ktsp: no visible global function definition for
‘hist’
bootstrap.graphic.ktsp: no visible global function definition for
‘axis’
bootstrap.ktsp: no visible global function definition for ‘exprs’
bootstrap.ktsp: no visible global function definition for
‘featureNames’
bootstrap.ktsp: no visible global function definition for ‘pData’
cv: no visible global function definition for ‘predict’
cv2: no visible global function definition for ‘predict’
kts.pair : <anonymous>: no visible global function definition for
‘median’
ktspcalc: no visible global function definition for ‘exprs’
ktspcalc: no visible global function definition for ‘featureNames’
ktspcalc: no visible global function definition for ‘pData’
ktspcalc2: no visible global function definition for ‘exprs’
ktspcalc2: no visible global function definition for ‘featureNames’
ktspcalc2: no visible global function definition for ‘pData’
ktspcalc2 : <anonymous>: no visible global function definition for
‘median’
ktspcalc2 : <anonymous>: no visible global function definition for
‘na.omit’
ktspplot: no visible global function definition for ‘par’
ktspplot: no visible global function definition for ‘plot’
ktspplot: no visible global function definition for ‘mtext’
ktspplot: no visible global function definition for ‘points’
ktspplot: no visible global function definition for ‘abline’
predict.ktsp: no visible global function definition for ‘featureNames’
predict.ktsp: no visible global function definition for ‘exprs’
summary.ktsp: no visible global function definition for ‘predict’
Undefined global functions or variables:
abline axis exprs featureNames hist layout legend lines median mtext
na.omit pData par plot points predict text title
Consider adding
importFrom("graphics", "abline", "axis", "hist", "layout", "legend",
"lines", "mtext", "par", "plot", "points", "text", "title")
importFrom("stats", "median", "na.omit", "predict")
to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64