CRAN Package Check Results for Package HydroMe

Last updated on 2020-11-21 15:49:06 CET.

Check Details

Version: 2.0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'minpack.lm' 'nlme'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    Dstart: no visible global function definition for 'coef'
    Dstart: no visible global function definition for 'lm'
    SSkosugi: no visible global function definition for 'pnorm'
    SSkosugi: no visible global function definition for 'dnorm'
    Undefined global functions or variables:
     coef dnorm lm pnorm
    Consider adding
     importFrom("stats", "coef", "dnorm", "lm", "pnorm")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: Rd line widths
Result: NOTE
    Rd file 'Brook.Rd':
     \examples lines wider than 100 characters:
     brook.ns=nlsLM(y~Brook(x,thr,ths,alp,nscal),data=pf, control=nls.lm.control(maxiter=200),start=c(thr=Dstart(pf)[1],ths=Dstart(pf)[2], a ... [TRUNCATED]
    
    Rd file 'Expo.Rd':
     \examples lines wider than 100 characters:
     expo.ns=nlsLM(y~Expo(x,thr,ths,alp),data=pf, control=nls.lm.control(maxiter=200),start=c(thr=Dstart(pf)[1],ths=Dstart(pf)[2], alp=Dstar ... [TRUNCATED]
    
    Rd file 'Ruso.Rd':
     \examples lines wider than 100 characters:
     ruso.ns=nlsLM(y~Ruso(x,thr,ths,alp,nscal),data=pf, control=nls.lm.control(maxiter=200),start=c(thr=Dstart(pf)[1],ths=Dstart(pf)[2], alp ... [TRUNCATED]
    
    Rd file 'SSfredlund.Rd':
     \examples lines wider than 100 characters:
     fredlund.ns=nlsLM(y~SSfredlund(x,thr,ths,alp,nscal,mscal),data=pf,control=nls.lm.control(maxiter=200,options(warn=-1)))
    
    Rd file 'SSkosugi.Rd':
     \examples lines wider than 100 characters:
     kosugi.ns=nlsLM(y~SSkosugi(x,thr,ths,alp,nscal),data=subset(isric, Sample=="Benin2"),control=nls.lm.control(maxiter=200,options(warn=-1 ... [TRUNCATED]
    
    Rd file 'SSvgm.Rd':
     \examples lines wider than 100 characters:
     vn.ns=nlsLM(y~SSvgm(x,thr,ths,alp,nscal,mscal),data=subset(isric, Sample=="Benin2"),control=nls.lm.control(maxiter=200,options(warn=-1) ... [TRUNCATED]
    
    Rd file 'Tani.Rd':
     \examples lines wider than 100 characters:
     tani.ns=nlsLM(y~Tani(x,thr,ths,alp),data=pf, control=nls.lm.control(maxiter=200),start=c(thr=Dstart(pf)[1],ths=Dstart(pf)[2], alp=Dstar ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0
Check: examples
Result: ERROR
    Running examples in 'HydroMe-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: HydroMe2-package
    > ### Title: R codes for estimating water retention and infiltration model
    > ### parameters using experimental data
    > ### Aliases: HydroMe2-package HydroMe2
    > ### Keywords: package
    >
    > ### ** Examples
    >
    > data(infilt)
    > gamp.ns=nlsLM(Rate~SSgampt(Time,ks,A), infilt)
    > summary(gamp.ns)
    
    Formula: Rate ~ SSgampt(Time, ks, A)
    
    Parameters:
     Estimate Std. Error t value Pr(>|t|)
    ks 0.39399 0.01472 26.76 <2e-16 ***
    A 1.13613 0.07361 15.43 <2e-16 ***
    ---
    Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
    
    Residual standard error: 0.4191 on 1103 degrees of freedom
    
    Number of iterations to convergence: 2
    Achieved convergence tolerance: 1.49e-08
    
    > data(isric)
    > isric1=isric[1:32,]
    > omuto=nlsList(y~SSomuto(x,ths1,alp1,ths2,alp2)|Sample, isric1)
    Warning: 4 times caught the same error in (attr(object, "initial"))(mCall = mCall, data = data, LHS = LHS, ...): unused arguments (control = list(50, 1e-05, 0.0009765625, FALSE, FALSE, 0, FALSE), trace = FALSE)
    > omuto.nlme=nlme(omuto)## for fitting mixed-effects models
    Error in names(start$fixed) <- names(cf) :
     attempt to set an attribute on NULL
    Calls: nlme -> nlme.nlsList
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.0
Check: examples
Result: ERROR
    Running examples in ‘HydroMe-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: HydroMe2-package
    > ### Title: R codes for estimating water retention and infiltration model
    > ### parameters using experimental data
    > ### Aliases: HydroMe2-package HydroMe2
    > ### Keywords: package
    >
    > ### ** Examples
    >
    > data(infilt)
    > gamp.ns=nlsLM(Rate~SSgampt(Time,ks,A), infilt)
    > summary(gamp.ns)
    
    Formula: Rate ~ SSgampt(Time, ks, A)
    
    Parameters:
     Estimate Std. Error t value Pr(>|t|)
    ks 0.39399 0.01472 26.76 <2e-16 ***
    A 1.13613 0.07361 15.43 <2e-16 ***
    ---
    Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
    
    Residual standard error: 0.4191 on 1103 degrees of freedom
    
    Number of iterations to convergence: 2
    Achieved convergence tolerance: 1.49e-08
    
    > data(isric)
    > isric1=isric[1:32,]
    > omuto=nlsList(y~SSomuto(x,ths1,alp1,ths2,alp2)|Sample, isric1)
    Warning: 4 times caught the same error in (attr(object, "initial"))(mCall = mCall, data = data, LHS = LHS, ...): unused arguments (control = list(50, 1e-05, 0.0009765625, FALSE, FALSE, 0, FALSE), trace = FALSE)
    > omuto.nlme=nlme(omuto)## for fitting mixed-effects models
    Error in names(start$fixed) <- names(cf) :
     attempt to set an attribute on NULL
    Calls: nlme -> nlme.nlsList
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64