Last updated on 2020-12-11 06:47:39 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.81 | 15.89 | 78.67 | 94.56 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.81 | 11.81 | 61.38 | 73.19 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.81 | 132.79 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.81 | 110.20 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.81 | 38.00 | 139.00 | 177.00 | OK | |
| r-patched-linux-x86_64 | 0.81 | 14.19 | 74.76 | 88.95 | OK | |
| r-patched-solaris-x86 | 0.81 | 160.00 | WARN | |||
| r-release-linux-x86_64 | 0.81 | 14.59 | 74.31 | 88.90 | OK | |
| r-release-macos-x86_64 | 0.81 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.81 | 31.00 | 141.00 | 172.00 | OK | |
| r-oldrel-macos-x86_64 | 0.81 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.81 | 31.00 | 126.00 | 157.00 | OK |
Version: 0.81
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘MetaSKAT.Rnw’ using Sweave
Loading required package: Matrix
Loading required package: SPAtest
Read SetID file
SetID file has10sets
Read Bim file
Bim file has828markers
Merge datasets and get set info
Save was done successfully!
Close the opened Bed file: /home/ripley/R/packages/tests32/MetaSKAT.Rcheck/vign_test/MetaSKAT/vignettes/01.bed
Read SetID file
SetID file has10sets
Read Bim file
Bim file has828markers
Close the opened MSSD file: ./01.MSSD
Merge datasets and get set info
Save was done successfully!
Close the opened Bed file: /home/ripley/R/packages/tests32/MetaSKAT.Rcheck/vign_test/MetaSKAT/vignettes/02.bed
Read SetID file
SetID file has10sets
Read Bim file
Bim file has828markers
Close the opened MSSD file: ./02.MSSD
Merge datasets and get set info
Save was done successfully!
Close the opened Bed file: /home/ripley/R/packages/tests32/MetaSKAT.Rcheck/vign_test/MetaSKAT/vignettes/03.bed
Number of cohorts = 3
997 samples, 10 sets, 528 SNPs and 465 unique SNPs
*** caught segfault ***
address 7195a620, cause 'memory not mapped'
Traceback:
1: Open_MSSD_File_2Read(File.Mat.vec, File.Info.vec)
2: eval(expr, .GlobalEnv)
3: eval(expr, .GlobalEnv)
4: withVisible(eval(expr, .GlobalEnv))
5: doTryCatch(return(expr), name, parentenv, handler)
6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
7: tryCatchList(expr, classes, parentenv, handlers)
8: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
9: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
10: evalFunc(ce, options)
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(evalFunc(ce, options), finally = { cat("\n") sink()})
13: driver$runcode(drobj, chunk, chunkopts)
14: utils::Sweave(...)
15: engine$weave(file, quiet = quiet, encoding = enc)
16: doTryCatch(return(expr), name, parentenv, handler)
17: tryCatchOne(expr, names, parentenv, handlers[[1L]])
18: tryCatchList(expr, classes, parentenv, handlers)
19: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
20: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests32/MetaSKAT.Rcheck/vign_test/MetaSKAT", ser_elibs = "/tmp/Rtmp.JaOKx/file2f254141ed0.rds")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86