CRAN Package Check Results for Package Actigraphy

Last updated on 2020-12-13 05:48:19 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.4.0	9.70	84.86	94.56	ERROR
r-devel-linux-x86_64-debian-gcc	1.4.0	7.83	66.27	74.10	ERROR
r-devel-linux-x86_64-fedora-clang	1.4.0			123.77	ERROR
r-devel-linux-x86_64-fedora-gcc	1.4.0			114.84	ERROR
r-devel-windows-ix86+x86_64	1.4.0	21.00	98.00	119.00	ERROR
r-patched-linux-x86_64	1.4.0	6.83	80.66	87.49	ERROR
r-patched-solaris-x86	1.4.0			168.10	ERROR
r-release-linux-x86_64	1.4.0	6.77	85.05	91.82	ERROR
r-release-macos-x86_64	1.4.0				OK
r-release-windows-ix86+x86_64	1.4.0	16.00	109.00	125.00	ERROR
r-oldrel-macos-x86_64	1.4.0				OK
r-oldrel-windows-ix86+x86_64	1.4.0	12.00	74.00	86.00	ERROR

Check Details

Version: 1.4.0
Check: examples
Result: ERROR
    Running examples in 'Actigraphy-Ex.R' failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: cat_flm_plot
    > ### Title: Plot Functional Linear Model Analysis Results of a Categorical
    > ### Type
    > ### Aliases: cat_flm_plot
    >
    > ### ** Examples
    >
    > data(act_29pt)
    > data(clinic_29pt_ahi)
    >
    > data <- act_29pt
    > ahi <- clinic_29pt_ahi
    >
    > ahi$ahicat <- as.factor(ifelse(ahi$AHI >= 0 & ahi$AHI <= 5, 1,
    + ifelse(ahi$AHI > 5 & ahi$AHI <= 15, 2,
    + ifelse(ahi$AHI > 15 & ahi$AHI <= 30, 3,
    + ifelse(ahi$AHI > 30, 4, 0)))))
    >
    > matchidb <- fda.matchid(data, ahi[,-2] , "factor",
    + c("normal", "mild", "moderate", "severe"))
    > FDcatahi <- fda.smoothdata(matchidb)
    >
    > L <- nrow(data)
    > lb <- c("Midnight", "6AM", "Noon", "6PM", "Midnight")
    > xat <- c(0, L/4, L/2, 3*L/4, L)
    >
    > geftFDcatahi <- flm_cate(FDcatahi)
    Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
     'data' must be of a vector type, was 'NULL'
    Calls: flm_cate ... as.matrix -> as.matrix -> as.matrix.default -> array
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'Categorical-FDA-Tutorial.Rnw' using Sweave
    Loading required package: fda
    Loading required package: splines
    Loading required package: Matrix
    Loading required package: fds
    Loading required package: rainbow
    Loading required package: MASS
    Loading required package: pcaPP
    Loading required package: RCurl

    Attaching package: 'fda'

    The following object is masked from 'package:graphics':

     matplot


    Error: processing vignette 'Categorical-FDA-Tutorial.Rnw' failed with diagnostics:
     chunk 6
    Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
     'data' must be of a vector type, was 'NULL'

    --- failed re-building 'Categorical-FDA-Tutorial.Rnw'

    --- re-building 'Continuous-FDA-Tutorial.Rnw' using Sweave
    Loading required package: fda
    Loading required package: splines
    Loading required package: Matrix
    Loading required package: fds
    Loading required package: rainbow
    Loading required package: MASS
    Loading required package: pcaPP
    Loading required package: RCurl

    Attaching package: 'fda'

    The following object is masked from 'package:graphics':

     matplot


    Error: processing vignette 'Continuous-FDA-Tutorial.Rnw' failed with diagnostics:
     chunk 5
    Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
     'data' must be of a vector type, was 'NULL'

    --- failed re-building 'Continuous-FDA-Tutorial.Rnw'

    --- re-building 'Figures-from-Referenced-Paper.Rnw' using Sweave
    Loading required package: fda
    Loading required package: splines
    Loading required package: Matrix
    Loading required package: fds
    Loading required package: rainbow
    Loading required package: MASS
    Loading required package: pcaPP
    Loading required package: RCurl

    Attaching package: 'fda'

    The following object is masked from 'package:graphics':

     matplot


    Attaching package: 'lattice'

    The following object is masked from 'package:fda':

     melanoma


    Error: processing vignette 'Figures-from-Referenced-Paper.Rnw' failed with diagnostics:
     chunk 4
    Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
     'data' must be of a vector type, was 'NULL'

    --- failed re-building 'Figures-from-Referenced-Paper.Rnw'

    SUMMARY: processing the following files failed:
     'Categorical-FDA-Tutorial.Rnw' 'Continuous-FDA-Tutorial.Rnw'
     'Figures-from-Referenced-Paper.Rnw'

    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.4.0
Check: examples
Result: ERROR
    Running examples in ‘Actigraphy-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: cat_flm_plot
    > ### Title: Plot Functional Linear Model Analysis Results of a Categorical
    > ### Type
    > ### Aliases: cat_flm_plot
    >
    > ### ** Examples
    >
    > data(act_29pt)
    > data(clinic_29pt_ahi)
    >
    > data <- act_29pt
    > ahi <- clinic_29pt_ahi
    >
    > ahi$ahicat <- as.factor(ifelse(ahi$AHI >= 0 & ahi$AHI <= 5, 1,
    + ifelse(ahi$AHI > 5 & ahi$AHI <= 15, 2,
    + ifelse(ahi$AHI > 15 & ahi$AHI <= 30, 3,
    + ifelse(ahi$AHI > 30, 4, 0)))))
    >
    > matchidb <- fda.matchid(data, ahi[,-2] , "factor",
    + c("normal", "mild", "moderate", "severe"))
    > FDcatahi <- fda.smoothdata(matchidb)
    >
    > L <- nrow(data)
    > lb <- c("Midnight", "6AM", "Noon", "6PM", "Midnight")
    > xat <- c(0, L/4, L/2, 3*L/4, L)
    >
    > geftFDcatahi <- flm_cate(FDcatahi)
    Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
     'data' must be of a vector type, was 'NULL'
    Calls: flm_cate ... as.matrix -> as.matrix -> as.matrix.default -> array
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Categorical-FDA-Tutorial.Rnw’ using Sweave
    Loading required package: fda
    Loading required package: splines
    Loading required package: Matrix
    Loading required package: fds
    Loading required package: rainbow
    Loading required package: MASS
    Loading required package: pcaPP
    Loading required package: RCurl

    Attaching package: ‘fda’

    The following object is masked from ‘package:graphics’:

     matplot


    Error: processing vignette 'Categorical-FDA-Tutorial.Rnw' failed with diagnostics:
     chunk 6
    Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
     'data' must be of a vector type, was 'NULL'

    --- failed re-building ‘Categorical-FDA-Tutorial.Rnw’

    --- re-building ‘Continuous-FDA-Tutorial.Rnw’ using Sweave
    Loading required package: fda
    Loading required package: splines
    Loading required package: Matrix
    Loading required package: fds
    Loading required package: rainbow
    Loading required package: MASS
    Loading required package: pcaPP
    Loading required package: RCurl

    Attaching package: ‘fda’

    The following object is masked from ‘package:graphics’:

     matplot


    Error: processing vignette 'Continuous-FDA-Tutorial.Rnw' failed with diagnostics:
     chunk 5
    Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
     'data' must be of a vector type, was 'NULL'

    --- failed re-building ‘Continuous-FDA-Tutorial.Rnw’

    --- re-building ‘Figures-from-Referenced-Paper.Rnw’ using Sweave
    Loading required package: fda
    Loading required package: splines
    Loading required package: Matrix
    Loading required package: fds
    Loading required package: rainbow
    Loading required package: MASS
    Loading required package: pcaPP
    Loading required package: RCurl

    Attaching package: ‘fda’

    The following object is masked from ‘package:graphics’:

     matplot


    Attaching package: ‘lattice’

    The following object is masked from ‘package:fda’:

     melanoma


    Error: processing vignette 'Figures-from-Referenced-Paper.Rnw' failed with diagnostics:
     chunk 4
    Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
     'data' must be of a vector type, was 'NULL'

    --- failed re-building ‘Figures-from-Referenced-Paper.Rnw’

    SUMMARY: processing the following files failed:
     ‘Categorical-FDA-Tutorial.Rnw’ ‘Continuous-FDA-Tutorial.Rnw’
     ‘Figures-from-Referenced-Paper.Rnw’

    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64