Last updated on 2021-01-15 08:49:39 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.9 | 31.35 | 123.73 | 155.08 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.9 | 23.24 | 89.98 | 113.22 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.9 | 197.72 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.9 | 238.30 | WARN | |||
| r-devel-windows-ix86+x86_64 | 0.1.9 | 88.00 | 358.00 | 446.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.9 | 25.98 | 114.61 | 140.59 | ERROR | |
| r-patched-solaris-x86 | 0.1.9 | 202.80 | ERROR | |||
| r-release-linux-x86_64 | 0.1.9 | 27.11 | 114.87 | 141.98 | ERROR | |
| r-release-macos-x86_64 | 0.1.9 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.1.9 | 70.00 | 280.00 | 350.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.1.9 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.9 | 56.00 | 256.00 | 312.00 | NOTE |
Version: 0.1.9
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'lidR'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 0.1.9
Check: examples
Result: ERROR
Running examples in 'rGEDI-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clipLevel1BGeoGeometry
> ### Title: Clip GEDI Full Waveform Geolocations by geometry
> ### Aliases: clipLevel1BGeoGeometry
>
> ### ** Examples
>
> # Specifying the path to GEDI level1B data (zip file)
> outdir = tempdir()
> level1B_fp_zip <- system.file("extdata",
+ "GEDI01_B_2019108080338_O01964_T05337_02_003_01_sub.zip",
+ package="rGEDI")
>
> # Unzipping GEDI level1B data
> level1Bpath <- unzip(level1B_fp_zip,exdir = outdir)
>
> # Reading GEDI level1B data (h5 file)
> level1b<-readLevel1B(level1Bpath=level1Bpath)
>
> # Extracting GEDI Full Waveform Geolocations
> level1bGeo<-getLevel1BGeo(level1b)
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>
> # Specifying the path to shapefile
> polygon_filepath <- system.file("extdata", "stands_cerrado.shp", package="rGEDI")
>
> # Reading shapefile as SpatialPolygonsDataFrame object
> library(raster)
Loading required package: sp
> polygon_spdf<-shapefile(polygon_filepath)
Error in .requireRgdal() : package 'rgdal' is not available
Calls: shapefile -> shapefile -> .local -> .requireRgdal
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.9
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'tutorial.Rmd' using rmarkdown
trying URL 'https://github.com/carlos-alberto-silva/rGEDI/releases/download/datasets/examples.zip'
Content type 'application/octet-stream' length 13208640 bytes (12.6 MB)
==================================================
downloaded 12.6 MB
Warning in par(oldpar) : graphical parameter "cin" cannot be set
Warning in par(oldpar) : graphical parameter "cra" cannot be set
Warning in par(oldpar) : graphical parameter "csi" cannot be set
Warning in par(oldpar) : graphical parameter "cxy" cannot be set
Warning in par(oldpar) : graphical parameter "din" cannot be set
Warning in par(oldpar) : graphical parameter "page" cannot be set
Warning in doTryCatch(return(expr), name, parentenv, handler) :
graphical parameter "type" is obsolete
Warning in doTryCatch(return(expr), name, parentenv, handler) :
graphical parameter "type" is obsolete
Loading required package: sp
Quitting from lines 343-354 (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
package 'rgdal' is not available
--- failed re-building 'tutorial.Rmd'
SUMMARY: processing the following file failed:
'tutorial.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.9
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 1.3Mb
extdata 2.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.9
Check: examples
Result: ERROR
Running examples in ‘rGEDI-Ex.R’ failed
The error most likely occurred in:
> ### Name: clipLevel1BGeoGeometry
> ### Title: Clip GEDI Full Waveform Geolocations by geometry
> ### Aliases: clipLevel1BGeoGeometry
>
> ### ** Examples
>
> # Specifying the path to GEDI level1B data (zip file)
> outdir = tempdir()
> level1B_fp_zip <- system.file("extdata",
+ "GEDI01_B_2019108080338_O01964_T05337_02_003_01_sub.zip",
+ package="rGEDI")
>
> # Unzipping GEDI level1B data
> level1Bpath <- unzip(level1B_fp_zip,exdir = outdir)
>
> # Reading GEDI level1B data (h5 file)
> level1b<-readLevel1B(level1Bpath=level1Bpath)
>
> # Extracting GEDI Full Waveform Geolocations
> level1bGeo<-getLevel1BGeo(level1b)
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>
> # Specifying the path to shapefile
> polygon_filepath <- system.file("extdata", "stands_cerrado.shp", package="rGEDI")
>
> # Reading shapefile as SpatialPolygonsDataFrame object
> library(raster)
Loading required package: sp
> polygon_spdf<-shapefile(polygon_filepath)
Error in .requireRgdal() : package 'rgdal' is not available
Calls: shapefile -> shapefile -> .local -> .requireRgdal
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.9
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘tutorial.Rmd’ using rmarkdown
trying URL 'https://github.com/carlos-alberto-silva/rGEDI/releases/download/datasets/examples.zip'
Content type 'application/octet-stream' length 13208640 bytes (12.6 MB)
==================================================
downloaded 12.6 MB
Warning in par(oldpar) : graphical parameter "cin" cannot be set
Warning in par(oldpar) : graphical parameter "cra" cannot be set
Warning in par(oldpar) : graphical parameter "csi" cannot be set
Warning in par(oldpar) : graphical parameter "cxy" cannot be set
Warning in par(oldpar) : graphical parameter "din" cannot be set
Warning in par(oldpar) : graphical parameter "page" cannot be set
Warning in doTryCatch(return(expr), name, parentenv, handler) :
graphical parameter "type" is obsolete
Warning in doTryCatch(return(expr), name, parentenv, handler) :
graphical parameter "type" is obsolete
Loading required package: sp
Quitting from lines 343-354 (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
package 'rgdal' is not available
--- failed re-building ‘tutorial.Rmd’
SUMMARY: processing the following file failed:
‘tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.9
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘tutorial.Rmd’ using rmarkdown
trying URL 'https://github.com/carlos-alberto-silva/rGEDI/releases/download/datasets/examples.zip'
Content type 'application/octet-stream' length 13208640 bytes (12.6 MB)
==================================================
downloaded 12.6 MB
Warning in par(oldpar) : graphical parameter "cin" cannot be set
Warning in par(oldpar) : graphical parameter "cra" cannot be set
Warning in par(oldpar) : graphical parameter "csi" cannot be set
Warning in par(oldpar) : graphical parameter "cxy" cannot be set
Warning in par(oldpar) : graphical parameter "din" cannot be set
Warning in par(oldpar) : graphical parameter "page" cannot be set
Warning in doTryCatch(return(expr), name, parentenv, handler) :
graphical parameter "type" is obsolete
Warning in doTryCatch(return(expr), name, parentenv, handler) :
graphical parameter "type" is obsolete
Loading required package: sp
Loading required namespace: rgeos
Loading required package: rasterVis
Loading required package: lattice
Loading required package: latticeExtra
Loading required package: viridis
Loading required package: viridisLite
Quitting from lines 641-685 (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
there is no package called 'lidR'
--- failed re-building ‘tutorial.Rmd’
SUMMARY: processing the following file failed:
‘tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.9
Check: examples
Result: ERROR
Running examples in ‘rGEDI-Ex.R’ failed
The error most likely occurred in:
> ### Name: clipLevel1BGeo
> ### Title: Clip GEDI Full Waveform Geolocations by Coordinates
> ### Aliases: clipLevel1BGeo
>
> ### ** Examples
>
> # Specifying the path to GEDI level1B data (zip file)
> outdir = tempdir()
> level1B_fp_zip <- system.file("extdata",
+ "GEDI01_B_2019108080338_O01964_T05337_02_003_01_sub.zip",
+ package="rGEDI")
>
> # Unzipping GEDI level1B data
> level1Bpath <- unzip(level1B_fp_zip,exdir = outdir)
>
> # Reading GEDI level1B data (h5 file)
> level1b<-readLevel1B(level1Bpath=level1Bpath)
>
> # Extracting GEDI Full Waveform Geolocations
> level1bGeo<-getLevel1BGeo(level1b)
|
| | 0%
|
|= | 2%Error in self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, :
HDF5-API Errors:
error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Calls: getLevel1BGeo ... assign -> [ -> [.H5D -> <Anonymous> -> <Anonymous> -> .Call
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.9
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘tutorial.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
trying URL 'https://github.com/carlos-alberto-silva/rGEDI/releases/download/datasets/examples.zip'
Content type 'application/octet-stream' length 13208640 bytes (12.6 MB)
==================================================
downloaded 12.6 MB
Quitting from lines 147-149 (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
HDF5-API Errors:
error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
--- failed re-building ‘tutorial.Rmd’
SUMMARY: processing the following file failed:
‘tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.9
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64