Last updated on 2021-01-18 16:48:28 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.2 | 10.48 | 195.81 | 206.29 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 7.91 | 144.16 | 152.07 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 260.75 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 256.00 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.2.2 | 16.00 | 235.00 | 251.00 | OK | |
| r-patched-linux-x86_64 | 0.2.2 | 10.37 | 185.97 | 196.34 | OK | |
| r-patched-solaris-x86 | 0.2.2 | 249.10 | OK | |||
| r-release-linux-x86_64 | 0.2.2 | 9.57 | 185.35 | 194.92 | OK | |
| r-release-macos-x86_64 | 0.2.2 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.2.2 | 19.00 | 255.00 | 274.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.2.2 | 21.00 | 287.00 | 308.00 | OK |
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [44s/58s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("EvidenceSynthesis")
Loading required package: EvidenceSynthesis
Loading required package: survival
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Operator analysis
Operator Tuning Count Time Time/Op Pr(accept) Smoothed_Pr(accept)
normalNormalMeanGibbsOperator 90728 256 0.0 1.0 1.0
scale(tau) 0.342 90800 273 0.0 0.2321 0.25
theta1 3.166 90570 243 0.0 0.2343 0.14
theta2 3.246 91111 380 0.0 0.2349 0.17
theta3 3.023 90392 249 0.0 0.2349 0.13
theta4 3.378 90570 252 0.0 0.2367 0.19
theta5 3.542 91205 419 0.0 0.2364 0.12
theta6 3.134 91537 241 0.0 0.2366 0.23
theta7 3.242 90013 330 0.0 0.2366 0.2
theta8 2.982 90828 222 0.0 0.2349 0.16
theta9 3.434 90719 243 0.0 0.2341 0.17
theta10 3.551 90527 235 0.0 0.2359 0.16
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Operator analysis
Operator Tuning Count Time Time/Op Pr(accept) Smoothed_Pr(accept)
normalNormalMeanGibbsOperator 90728 800 0.01 1.0 1.0
scale(tau) 0.33 90800 845 0.01 0.233 0.23
theta1 2.713 90570 772 0.01 0.2349 0.41
theta2 2.825 91111 728 0.01 0.2342 0.3
theta3 2.663 90392 825 0.01 0.2334 0.26
theta4 2.87 90570 692 0.01 0.2352 0.3
theta5 2.998 91205 867 0.01 0.2341 0.37
theta6 2.672 91537 754 0.01 0.2338 0.33
theta7 2.841 90013 690 0.01 0.2346 0.31
theta8 2.674 90828 688 0.01 0.2339 0.36
theta9 2.952 90719 727 0.01 0.2339 0.32
theta10 3.087 90527 771 0.01 0.2355 0.39
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Operator analysis
Operator Tuning Count Time Time/Op Pr(accept) Smoothed_Pr(accept)
normalNormalMeanGibbsOperator 155798 426 0.0 1.0 1.0
scale(tau) 0.247 155197 359 0.0 0.2341 0.25
theta1 2.313 155147 381 0.0 0.235 0.17
theta2 2.139 156002 383 0.0 0.2345 0.15
theta3 2.167 156005 404 0.0 0.2341 0.17
theta4 2.236 155582 436 0.0 0.2347 0.17
theta5 2.269 155269 344 0.0 0.2324 0.15
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Operator analysis
Operator Tuning Count Time Time/Op Pr(accept) Smoothed_Pr(accept)
normalNormalMeanGibbsOperator 99057 351 0.0 1.0 1.0
scale(tau) 0.329 99166 387 0.0 0.2329 0.19
theta1 3.061 98451 374 0.0 0.2336 0.41
theta2 3.032 99267 427 0.0 0.2349 0.29
theta3 2.989 98590 298 0.0 0.236 0.28
theta4 3.255 98968 405 0.0 0.2355 0.31
theta5 3.308 99497 438 0.0 0.2358 0.29
theta6 2.866 98687 324 0.0 0.2357 0.27
theta7 3.038 98859 402 0.0 0.2357 0.24
theta8 2.975 99195 376 0.0 0.2349 0.34
theta9 3.21 99263 322 0.0 0.2351 0.36
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Operator analysis
Operator Tuning Count Time Time/Op Pr(accept) Smoothed_Pr(accept)
normalNormalMeanGibbsOperator 155798 840 0.01 1.0 1.0
scale(tau) 0.249 155197 605 0.0 0.2337 0.25
theta1 1.696 155147 681 0.0 0.2345 0.18
theta2 1.756 156002 648 0.0 0.2343 0.15
theta3 1.715 156005 667 0.0 0.2339 0.16
theta4 1.976 155582 821 0.01 0.2346 0.15
theta5 1.818 155269 740 0.0 0.2336 0.17
══ Warnings ════════════════════════════════════════════════════════════════════
── Warning (test-nonNormalMetaAnalysis.R:103:3): Normal approximation: pooled matches meta-analysis ──
Estimate(s) with NA logRr detected. Removing before computing meta-analysis.
Backtrace:
1. EvidenceSynthesis::computeFixedEffectMetaAnalysis(data) test-nonNormalMetaAnalysis.R:103:2
2. EvidenceSynthesis:::cleanData(...)
── Warning (test-nonNormalMetaAnalysis.R:103:3): Normal approximation: pooled matches meta-analysis ──
Estimate(s) with NA seLogRr detected. Removing before computing meta-analysis.
Backtrace:
1. EvidenceSynthesis::computeFixedEffectMetaAnalysis(data) test-nonNormalMetaAnalysis.R:103:2
2. EvidenceSynthesis:::cleanData(...)
── Warning (test-nonNormalMetaAnalysis.R:110:3): Normal approximation: pooled matches random-effects meta-analysis ──
Estimate(s) with NA logRr detected. Removing before computing meta-analysis.
Backtrace:
1. EvidenceSynthesis::computeBayesianMetaAnalysis(data, seed = seed) test-nonNormalMetaAnalysis.R:110:2
2. EvidenceSynthesis:::cleanData(...)
── Warning (test-nonNormalMetaAnalysis.R:110:3): Normal approximation: pooled matches random-effects meta-analysis ──
Estimate(s) with NA seLogRr detected. Removing before computing meta-analysis.
Backtrace:
1. EvidenceSynthesis::computeBayesianMetaAnalysis(data, seed = seed) test-nonNormalMetaAnalysis.R:110:2
2. EvidenceSynthesis:::cleanData(...)
── Warning (test-nonNormalMetaAnalysis.R:119:3): Skew-normal approximation: pooled matches meta-analysis ──
Estimate(s) with extremely high sigma (>10000) detected. Removing before computing meta-analysis.
Backtrace:
1. EvidenceSynthesis::computeFixedEffectMetaAnalysis(data) test-nonNormalMetaAnalysis.R:119:2
2. EvidenceSynthesis:::cleanData(...)
── Warning (test-nonNormalMetaAnalysis.R:129:3): Skew-normal approximation: pooled matches random-effects meta-analysis ──
Estimate(s) with extremely high sigma (>10000) detected. Removing before computing meta-analysis.
Backtrace:
1. EvidenceSynthesis::computeBayesianMetaAnalysis(data, seed = seed) test-nonNormalMetaAnalysis.R:129:2
2. EvidenceSynthesis:::cleanData(...)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-nonNormalMetaAnalysis.R:120:3): Skew-normal approximation: pooled matches meta-analysis ──
`estimate` not equal to `pooledFixedFxEstimate`.
Component "ub": Mean absolute difference: 0.7589854
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 28 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc