Last updated on 2021-01-22 05:50:23 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.7 | 12.58 | 142.13 | 154.71 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.3.7 | 11.04 | 105.99 | 117.03 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.3.7 | 190.13 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.7 | 192.41 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.3.7 | 32.00 | 194.00 | 226.00 | NOTE | |
| r-patched-linux-x86_64 | 0.3.7 | 14.70 | 134.28 | 148.98 | NOTE | |
| r-patched-solaris-x86 | 0.3.7 | 234.10 | ERROR | |||
| r-release-linux-x86_64 | 0.3.7 | 12.92 | 133.25 | 146.17 | NOTE | |
| r-release-macos-x86_64 | 0.3.7 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.3.7 | 40.00 | 196.00 | 236.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.3.7 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.3.7 | 20.00 | 135.00 | 155.00 | NOTE |
Version: 0.3.7
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'GRCh37_MT_ensGene.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 0.3.7
Check: installed package size
Result: NOTE
installed size is 11.7Mb
sub-directories of 1Mb or more:
doc 2.5Mb
extdata 8.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.3.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/123s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(BioInstaller)
>
>
> test_check("BioInstaller")
cloning into '/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/github_demo0'...
trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
Content type 'text/plain; charset=utf-8' length 3131 bytes
==================================================
downloaded 3131 bytes
trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
Content type 'text/plain; charset=utf-8' length 3131 bytes
==================================================
downloaded 3131 bytes
trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
Content type 'text/plain; charset=utf-8' length 3131 bytes
==================================================
downloaded 3131 bytes
cloning into '/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/github_demo3'...
cloning into '/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/github_demo'...
cloning into '/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/denpendence1'...
/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/destdir.initial not empty, overwrite?[y]
Please input y/n/Y/N!
/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/destdir.initial not empty, overwrite?[y]
Please input y/n/Y/N!
/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/destdir.initial not empty, overwrite?[y]
More than 3 counts input, default is not to overwrite.
/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/destdir.initial existed, overwrite?[y]
Please input y/n/Y/N!
/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/destdir.initial existed, overwrite?[y]
Please input y/n/Y/N!
/tmp/RtmpDHaObl/working_dir/RtmpanaG2M/destdir.initial existed, overwrite?[y]
More than 3 counts input, default is not to overwrite.
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test_install.R:12:5): install.github ─────────────────────────────────
Error: Error in 'git2r_clone': the SSL certificate is invalid
Backtrace:
█
1. └─BioInstaller::install.github(...) test_install.R:12:4
2. └─BioInstaller:::git.download(...)
3. └─git2r::clone(github_url, destdir)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 62 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86