Last updated on 2021-02-05 15:54:14 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 8.58 | 77.89 | 86.47 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 5.91 | 51.82 | 57.73 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 110.04 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 106.34 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.1 | 19.00 | 74.00 | 93.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1 | 8.33 | 71.99 | 80.32 | NOTE | |
| r-patched-solaris-x86 | 1.1 | 144.90 | NOTE | |||
| r-release-linux-x86_64 | 1.1 | 7.14 | 73.64 | 80.78 | NOTE | |
| r-release-macos-x86_64 | 1.1 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.1 | 17.00 | 98.00 | 115.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1 | 12.00 | 68.00 | 80.00 | NOTE |
Version: 1.1
Check: R code for possible problems
Result: NOTE
tri.app: no visible binding for global variable 'IQR'
tri.app : infun: no visible global function definition for 'quantile'
tri.app : infun : <anonymous>: no visible global function definition
for 'cor'
tri.app : infun : <anonymous>: no visible global function definition
for 't.test'
tri.app : infun: no visible global function definition for 'cor'
tri.app : infun: no visible global function definition for 'p.adjust'
tri.basic: no visible global function definition for 'quantile'
tri.basic: no visible global function definition for 'cor.test'
tri.basic: no visible global function definition for 'lm'
tri.basic: no visible global function definition for 't.test'
tri.basic: no visible global function definition for 'pdf'
tri.basic: no visible global function definition for 'layout'
tri.basic: no visible global function definition for 'par'
tri.basic: no visible global function definition for 'boxplot'
tri.basic: no visible global function definition for 'axis'
tri.basic: no visible global function definition for 'abline'
tri.basic: no visible global function definition for 'points'
tri.basic: no visible global function definition for 'dev.off'
tri.enrich : <anonymous>: no visible global function definition for
'phyper'
tri.enrich: no visible global function definition for 'p.adjust'
tri.surv: no visible global function definition for 'median'
tri.surv: no visible global function definition for 'pdf'
tri.surv: no visible global function definition for 'colorRampPalette'
tri.surv: no visible global function definition for 'dev.off'
tri.surv: no visible global function definition for 'barplot'
tri.surv: no visible global function definition for 'axis'
tri.surv: no visible global function definition for 'pchisq'
tri.surv: no visible global function definition for 'text'
tri.surv: no visible global function definition for 'legend'
Undefined global functions or variables:
IQR abline axis barplot boxplot colorRampPalette cor cor.test dev.off
layout legend lm median p.adjust par pchisq pdf phyper points
quantile t.test text
Consider adding
importFrom("grDevices", "colorRampPalette", "dev.off", "pdf")
importFrom("graphics", "abline", "axis", "barplot", "boxplot",
"layout", "legend", "par", "points", "text")
importFrom("stats", "IQR", "cor", "cor.test", "lm", "median",
"p.adjust", "pchisq", "phyper", "quantile", "t.test")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64
Version: 1.1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'basic_1_HOTAIR_MXI1_CD58.pdf' 'basic_2_HOTAIR_MXI1_PRKCE.pdf'
'survival_1_HOTAIR_MXI1_CD58_exp_test.pdf'
'survival_1_HOTAIR_MXI1_CD58_exp_train.pdf'
'survival_1_HOTAIR_MXI1_CD58_test_curve.pdf'
'survival_1_HOTAIR_MXI1_CD58_test_score.pdf'
'survival_1_HOTAIR_MXI1_CD58_train_curve.pdf'
'survival_1_HOTAIR_MXI1_CD58_train_score.pdf'
'survival_2_HOTAIR_MXI1_PRKCE_exp_test.pdf'
'survival_2_HOTAIR_MXI1_PRKCE_exp_train.pdf'
'survival_2_HOTAIR_MXI1_PRKCE_test_curve.pdf'
'survival_2_HOTAIR_MXI1_PRKCE_test_score.pdf'
'survival_2_HOTAIR_MXI1_PRKCE_train_curve.pdf'
'survival_2_HOTAIR_MXI1_PRKCE_train_score.pdf'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘LncMod-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tri.app
> ### Title: Modulators Prediction
> ### Aliases: tri.app
> ### Keywords: tri.app
>
> ### ** Examples
>
> ##Different types of candidate modulators to predict
> ##Here we take four candidate modulators for example
> ##Two for modulator;one for initialnot;one for filterdnot(see value section in details)
> tri.app(ms=datatests[["m_app"]],ET=datatests[["ET"]],M.exp=datatests[["M_exp"]],
+ E.exp=datatests[["E_exp"]],T.exp=datatests[["T_exp"]])
Error in xtfrm.data.frame(x) : cannot xtfrm data frames
Calls: tri.app ... lapply -> FUN -> as.vector -> xtfrm -> xtfrm.data.frame
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1
Check: R code for possible problems
Result: NOTE
tri.app: no visible binding for global variable ‘IQR’
tri.app : infun: no visible global function definition for ‘quantile’
tri.app : infun : <anonymous>: no visible global function definition
for ‘cor’
tri.app : infun : <anonymous>: no visible global function definition
for ‘t.test’
tri.app : infun: no visible global function definition for ‘cor’
tri.app : infun: no visible global function definition for ‘p.adjust’
tri.basic: no visible global function definition for ‘quantile’
tri.basic: no visible global function definition for ‘cor.test’
tri.basic: no visible global function definition for ‘lm’
tri.basic: no visible global function definition for ‘t.test’
tri.basic: no visible global function definition for ‘pdf’
tri.basic: no visible global function definition for ‘layout’
tri.basic: no visible global function definition for ‘par’
tri.basic: no visible global function definition for ‘boxplot’
tri.basic: no visible global function definition for ‘axis’
tri.basic: no visible global function definition for ‘plot’
tri.basic: no visible global function definition for ‘abline’
tri.basic: no visible global function definition for ‘points’
tri.basic: no visible global function definition for ‘dev.off’
tri.enrich : <anonymous>: no visible global function definition for
‘phyper’
tri.enrich: no visible global function definition for ‘p.adjust’
tri.surv: no visible global function definition for ‘median’
tri.surv: no visible global function definition for ‘pdf’
tri.surv: no visible global function definition for ‘colorRampPalette’
tri.surv: no visible global function definition for ‘dev.off’
tri.surv: no visible global function definition for ‘barplot’
tri.surv: no visible global function definition for ‘axis’
tri.surv: no visible global function definition for ‘pchisq’
tri.surv: no visible global function definition for ‘plot’
tri.surv: no visible global function definition for ‘text’
tri.surv: no visible global function definition for ‘legend’
Undefined global functions or variables:
IQR abline axis barplot boxplot colorRampPalette cor cor.test dev.off
layout legend lm median p.adjust par pchisq pdf phyper plot points
quantile t.test text
Consider adding
importFrom("grDevices", "colorRampPalette", "dev.off", "pdf")
importFrom("graphics", "abline", "axis", "barplot", "boxplot",
"layout", "legend", "par", "plot", "points", "text")
importFrom("stats", "IQR", "cor", "cor.test", "lm", "median",
"p.adjust", "pchisq", "phyper", "quantile", "t.test")
to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64