CRAN Package Check Results for Package PAWL

Last updated on 2021-02-15 09:48:06 CET.

Check Details

Version: 0.5
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE
    Warning: no function found corresponding to methods exports from 'PAWL' for: 'show'
    
    A namespace must be able to be loaded with just the base namespace
    loaded: otherwise if the namespace gets loaded by a saved object, the
    session will be unable to start.
    
    Probably some imports need to be declared in the NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'foreach' 'ggplot2' 'reshape'
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     'foreach' 'ggplot2' 'methods' 'mvtnorm' 'reshape'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.5
Check: R code for possible problems
Result: NOTE
    ConvertResults: no visible global function definition for '%do%'
    ConvertResults: no visible global function definition for 'foreach'
    PlotAllVar: no visible global function definition for 'melt'
    PlotAllVar: no visible global function definition for 'ggplot'
    PlotAllVar: no visible global function definition for 'aes'
    PlotAllVar: no visible global function definition for 'geom_line'
    PlotAllVar: no visible global function definition for 'facet_wrap'
    PlotAllVar: no visible global function definition for 'theme'
    PlotAllVar: no visible global function definition for 'element_text'
    PlotAllVar: no visible global function definition for 'labs'
    PlotComp1vsComp2: no visible global function definition for 'ggplot'
    PlotComp1vsComp2: no visible global function definition for
     'aes_string'
    PlotComp1vsComp2: no visible global function definition for
     'geom_point'
    PlotComp1vsComp2: no visible global function definition for 'aes'
    PlotComp1vsComp2: no visible global function definition for 'xlab'
    PlotComp1vsComp2: no visible global function definition for 'ylab'
    PlotComp1vsComp2: no visible global function definition for 'labs'
    PlotDensComp1vsComp2: no visible global function definition for
     'ggplot'
    PlotDensComp1vsComp2: no visible global function definition for
     'aes_string'
    PlotDensComp1vsComp2: no visible global function definition for
     'stat_bin2d'
    PlotDensComp1vsComp2: no visible global function definition for
     'geom_density2d'
    PlotDensComp1vsComp2: no visible global function definition for 'theme'
    PlotFH: no visible global function definition for 'ggplot'
    PlotFH: no visible global function definition for 'aes'
    PlotFH: no visible global function definition for 'geom_step'
    PlotFH: no visible global function definition for 'xlab'
    PlotFH: no visible global function definition for 'ylab'
    PlotFH: no visible global function definition for 'theme'
    PlotHist: no visible global function definition for 'hist'
    PlotHistBin: no visible global function definition for 'hist'
    PlotHistBin: no visible global function definition for 'abline'
    PlotLogTheta: no visible global function definition for '%do%'
    PlotLogTheta: no visible global function definition for 'foreach'
    PlotLogTheta: no visible global function definition for 'melt'
    PlotLogTheta: no visible global function definition for 'ggplot'
    PlotLogTheta: no visible global function definition for 'aes'
    PlotLogTheta: no visible global function definition for 'geom_line'
    PlotLogTheta: no visible global function definition for 'geom_vline'
    PlotLogTheta: no visible global function definition for 'theme'
    PlotNbins: no visible global function definition for 'ggplot'
    PlotNbins: no visible global function definition for 'aes_string'
    PlotNbins: no visible global function definition for 'geom_step'
    PlotNbins: no visible global function definition for 'ylim'
    PlotNbins: no visible global function definition for 'ylab'
    PlotNbins: no visible global function definition for 'xlab'
    PlotNbins: no visible global function definition for 'theme'
    adaptiveMH: no visible global function definition for 'runif'
    binning.constructor: no visible global function definition for 'new'
    createMixtureTarget : rmixture: no visible global function definition
     for 'rmultinom'
    createMixtureTarget : rmixture: no visible global function definition
     for 'rnorm'
    createMixtureTarget : rprior: no visible global function definition for
     'rgamma'
    createMixtureTarget : rprior: no visible global function definition for
     'rnorm'
    createTrimodalTarget : generate: no visible global function definition
     for 'rmvnorm'
    fastdmvnorm: no visible global function definition for 'mahalanobis'
    fastlogdmvnorm: no visible global function definition for 'mahalanobis'
    fastrmvnorm: no visible global function definition for 'rnorm'
    pawl: no visible global function definition for 'runif'
    preexplorationAMH: no visible global function definition for 'quantile'
    proposal.constructor: no visible global function definition for 'new'
    smc: no visible global function definition for 'cov'
    smc: no visible global function definition for 'runif'
    smcparameters.constructor: no visible global function definition for
     'new'
    systematic_resampling: no visible global function definition for
     'runif'
    target.constructor: no visible global function definition for 'new'
    tuningparameters.constructor: no visible global function definition for
     'new'
    show,smcparameters: no visible global function definition for 'tail'
    Undefined global functions or variables:
     %do% abline aes aes_string cov element_text facet_wrap foreach
     geom_density2d geom_line geom_point geom_step geom_vline ggplot hist
     labs mahalanobis melt new quantile rgamma rmultinom rmvnorm rnorm
     runif stat_bin2d tail theme xlab ylab ylim
    Consider adding
     importFrom("graphics", "abline", "hist")
     importFrom("methods", "new")
     importFrom("stats", "cov", "mahalanobis", "quantile", "rgamma",
     "rmultinom", "rnorm", "runif")
     importFrom("utils", "tail")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.5
Check: Rd line widths
Result: NOTE
    Rd file 'createAdaptiveRandomWalkProposal.Rd':
     \usage lines wider than 90 characters:
     createAdaptiveRandomWalkProposal(nchains, targetdimension, adaptiveproposal, adaptationrate, sigma_init)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.5
Check: compiled code
Result: NOTE
    File ‘PAWL/libs/PAWL.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc