Last updated on 2021-02-15 09:48:15 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2 | 2.57 | 30.06 | 32.63 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.2 | 1.82 | 23.02 | 24.84 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2 | 52.09 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2 | 38.18 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.2 | 5.00 | 33.00 | 38.00 | NOTE | |
| r-patched-linux-x86_64 | 1.2 | 2.10 | 28.76 | 30.86 | NOTE | |
| r-patched-solaris-x86 | 1.2 | 55.00 | NOTE | |||
| r-release-linux-x86_64 | 1.2 | 2.23 | 28.54 | 30.77 | NOTE | |
| r-release-macos-x86_64 | 1.2 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.2 | 4.00 | 35.00 | 39.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2 | 4.00 | 65.00 | 69.00 | NOTE |
Version: 1.2
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to 'stats' which was already attached by Depends.
Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.2
Check: R code for possible problems
Result: NOTE
H: warning in do.call(what = bootstrap, arg = c(abundances =
list(abundances), func = H, func.arg = list(func.arg), boot.arg)):
partial argument match of 'arg' to 'args'
M.homog: warning in do.call(what = bootstrap, arg = c(abundances =
list(abundances), func = M.homog, func.arg = list(func.arg),
boot.arg)): partial argument match of 'arg' to 'args'
Rel.homog: warning in do.call(what = bootstrap, arg = c(abundances =
list(abundances), func = Rel.homog, func.arg = list(func.arg),
boot.arg)): partial argument match of 'arg' to 'args'
bootstrap: warning in do.call(what = func, arg = list(boots[, , i])):
partial argument match of 'arg' to 'args'
bootstrap: warning in do.call(what = func, arg = c(abundances =
list(boots[, , i]), func.arg)): partial argument match of 'arg' to
'args'
d: warning in do.call(what = bootstrap, arg = c(abundances =
list(abundances), func = d, func.arg = list(func.arg), boot.arg)):
partial argument match of 'arg' to 'args'
sim.groups: warning in do.call(what = bootstrap, arg = c(abundances =
list(rbind(scores[i, ], scores[j, ])), func = similarity, func.arg =
list(func.arg), boot.arg)): partial argument match of 'arg' to 'args'
sim.table: warning in do.call(what = bootstrap, arg = c(abundances =
list(rbind(scores[i, ], scores[j, ])), func = similarity, func.arg =
list(func.arg), boot.arg)): partial argument match of 'arg' to 'args'
similarity: warning in do.call(what = bootstrap, arg = c(abundances =
list(abundances), func = similarity, func.arg = list(func.arg),
boot.arg)): partial argument match of 'arg' to 'args'
turnover: warning in do.call(what = bootstrap, arg = c(abundances =
list(abundances), func = turnover, func.arg = list(func.arg),
boot.arg)): partial argument match of 'arg' to 'args'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.2
Check: Rd files
Result: NOTE
prepare_Rd: H.Rd:41-42: Dropping empty section \note
prepare_Rd: M.homog.Rd:19-21: Dropping empty section \details
prepare_Rd: M.homog.Rd:35-36: Dropping empty section \note
prepare_Rd: Rel.homog.Rd:24-25: Dropping empty section \note
prepare_Rd: bootstrap.Rd:34: Dropping empty section \note
prepare_Rd: d.Rd:35-36: Dropping empty section \note
prepare_Rd: normalize.rows.Rd:26-27: Dropping empty section \note
prepare_Rd: p.q.sum.Rd:23-24: Dropping empty section \note
prepare_Rd: p.q.sum.Rd:26: Dropping empty section \examples
prepare_Rd: sim.groups.Rd:27-28: Dropping empty section \note
prepare_Rd: sim.table.Rd:25-26: Dropping empty section \note
prepare_Rd: similarity.Rd:25-26: Dropping empty section \note
prepare_Rd: turnover.Rd:17-18: Dropping empty section \details
prepare_Rd: turnover.Rd:29-30: Dropping empty section \note
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.2
Check: Rd line widths
Result: NOTE
Rd file 'H.Rd':
\usage lines wider than 90 characters:
H(abundances, lev = "alpha", wts = FALSE, q = 1, HCDT = FALSE, gini = FALSE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 1 ... [TRUNCATED]
\examples lines wider than 100 characters:
simesants_freq<-normalize.rows(simesants[,-1])#not a necessary step, but just to show what you would do if your data were in the form o ... [TRUNCATED]
Rd file 'M.homog.Rd':
\usage lines wider than 90 characters:
M.homog(abundances, abundances2 = NULL, q = 1, std = FALSE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
Rd file 'Rel.homog.Rd':
\usage lines wider than 90 characters:
Rel.homog(abundances, abundances2 = NULL, wts = FALSE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
Rd file 'bootstrap.Rd':
\usage lines wider than 90 characters:
bootstrap(abundances, s.sizes = NULL, num.iter = 100, func, func.arg = "blank", sim.pop = FALSE, sim.par = FALSE)
\examples lines wider than 100 characters:
simesants_freq<-normalize.rows(simesants[,-1])#not a necessary step, but just to show what you would do if your data were in the form o ... [TRUNCATED]
Rd file 'd.Rd':
\usage lines wider than 90 characters:
d(abundances, lev = "alpha", wts = FALSE, q = 1, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
\examples lines wider than 100 characters:
simesants_freq<-normalize.rows(simesants[,-1])#not a necessary step, but just to show what you would do if your data were in the form o ... [TRUNCATED]
Rd file 'sim.groups.Rd':
\usage lines wider than 90 characters:
sim.groups(abundances1, abundances2, q = 1, labels = FALSE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
\examples lines wider than 100 characters:
sim.groups(simesants[1:3,-1],simesants[4:5,-1],labels=TRUE,boot=TRUE,boot.arg=list(num.iter=200))#gives standard errors only
Rd file 'sim.table.Rd':
\usage lines wider than 90 characters:
sim.table(abundances, q = 1, labels = FALSE, half = TRUE, diag = TRUE, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
Rd file 'similarity.Rd':
\usage lines wider than 90 characters:
similarity(abundances, abundances2 = NULL, q = 1, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
Rd file 'turnover.Rd':
\usage lines wider than 90 characters:
turnover(abundances, abundances2 = NULL, q = 1, boot = FALSE, boot.arg = list(s.sizes = NULL, num.iter = 100))
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64