CRAN Package Check Results for Package hillR

Last updated on 2021-03-01 04:47:00 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.5.0 ERROR
r-devel-linux-x86_64-debian-gcc 0.5.0 2.80 29.82 32.62 ERROR
r-devel-linux-x86_64-fedora-clang 0.5.0 63.44 ERROR
r-devel-linux-x86_64-fedora-gcc 0.5.0 50.46 ERROR
r-devel-windows-ix86+x86_64 0.5.0 7.00 42.00 49.00 OK
r-patched-linux-x86_64 0.5.0 3.39 38.04 41.43 ERROR
r-patched-solaris-x86 0.5.0 69.70 ERROR
r-release-linux-x86_64 0.5.0 3.43 37.67 41.10 ERROR
r-release-macos-x86_64 0.5.0 OK
r-release-windows-ix86+x86_64 0.5.0 8.00 70.00 78.00 OK
r-oldrel-macos-x86_64 0.5.0 OK
r-oldrel-windows-ix86+x86_64 0.5.0 5.00 53.00 58.00 OK

Check Details

Version: 0.5.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'vegetarian'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.5.0
Check: tests
Result: ERROR
     Running 'testthat.R' [7s/8s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(hillR)
     >
     > test_check("hillR")
    
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     == Skipped tests ===============================================================
     * empty test (1)
    
     == Failed tests ================================================================
     -- Error (test_hill_taxa.R:5:3): vegetariam package vs hillR, taxa alpha diversity, q = 0 --
     Error: there is no package called 'vegetarian'
     Backtrace:
     x
     1. +-base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0) test_hill_taxa.R:5:2
     2. | \-base::match.fun(FUN)
     3. \-base::loadNamespace(x)
     4. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. \-base:::withOneRestart(expr, restarts[[1L]])
     6. \-base:::doWithOneRestart(return(expr), restart)
     -- Error (test_hill_taxa.R:11:3): vegetariam package vs hillR, taxa alpha diversity, q = 0.9999 --
     Error: there is no package called 'vegetarian'
     Backtrace:
     x
     1. +-base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0.9999) test_hill_taxa.R:11:2
     2. | \-base::match.fun(FUN)
     3. \-base::loadNamespace(x)
     4. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. \-base:::withOneRestart(expr, restarts[[1L]])
     6. \-base:::doWithOneRestart(return(expr), restart)
     -- Error (test_hill_taxa.R:17:3): vegetariam package vs hillR, taxa alpha diversity, q = 1 --
     Error: there is no package called 'vegetarian'
     Backtrace:
     x
     1. +-base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 1) test_hill_taxa.R:17:2
     2. | \-base::match.fun(FUN)
     3. \-base::loadNamespace(x)
     4. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. \-base:::withOneRestart(expr, restarts[[1L]])
     6. \-base:::doWithOneRestart(return(expr), restart)
     -- Error (test_hill_taxa.R:23:3): vegetariam package vs hillR, taxa alpha diversity, q = 2 --
     Error: there is no package called 'vegetarian'
     Backtrace:
     x
     1. +-base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 2) test_hill_taxa.R:23:2
     2. | \-base::match.fun(FUN)
     3. \-base::loadNamespace(x)
     4. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. \-base:::withOneRestart(expr, restarts[[1L]])
     6. \-base:::doWithOneRestart(return(expr), restart)
     -- Error (test_hill_taxa.R:29:3): vegetariam package vs hillR, taxa beta diversity, q = 0 --
     Error: there is no package called 'vegetarian'
     Backtrace:
     x
     1. \-base::loadNamespace(x) test_hill_taxa.R:29:2
     2. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. \-base:::withOneRestart(expr, restarts[[1L]])
     4. \-base:::doWithOneRestart(return(expr), restart)
     -- Error (test_hill_taxa.R:41:3): vegetariam package vs hillR, taxa beta diversity, q = 0.9999 --
     Error: there is no package called 'vegetarian'
     Backtrace:
     x
     1. \-base::loadNamespace(x) test_hill_taxa.R:41:2
     2. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. \-base:::withOneRestart(expr, restarts[[1L]])
     4. \-base:::doWithOneRestart(return(expr), restart)
     -- Error (test_hill_taxa.R:53:3): vegetariam package vs hillR, taxa beta diversity, q = 1 --
     Error: there is no package called 'vegetarian'
     Backtrace:
     x
     1. \-base::loadNamespace(x) test_hill_taxa.R:53:2
     2. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. \-base:::withOneRestart(expr, restarts[[1L]])
     4. \-base:::doWithOneRestart(return(expr), restart)
     -- Error (test_hill_taxa.R:65:3): vegetariam package vs hillR, taxa beta diversity, q = 2 --
     Error: there is no package called 'vegetarian'
     Backtrace:
     x
     1. \-base::loadNamespace(x) test_hill_taxa.R:65:2
     2. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. \-base:::withOneRestart(expr, restarts[[1L]])
     4. \-base:::doWithOneRestart(return(expr), restart)
     -- Error (test_hill_taxa.R:77:3): vegetariam package vs hillR, taxa beta diversity, q = 2, two sites --
     Error: there is no package called 'vegetarian'
     Backtrace:
     x
     1. \-base::loadNamespace(x) test_hill_taxa.R:77:2
     2. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. \-base:::withOneRestart(expr, restarts[[1L]])
     4. \-base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 9 | WARN 0 | SKIP 1 | PASS 47 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.5.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [5s/7s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(hillR)
     >
     > test_check("hillR")
    
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     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     ● empty test (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_hill_taxa.R:5:3): vegetariam package vs hillR, taxa alpha diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0) test_hill_taxa.R:5:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:11:3): vegetariam package vs hillR, taxa alpha diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0.9999) test_hill_taxa.R:11:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:17:3): vegetariam package vs hillR, taxa alpha diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 1) test_hill_taxa.R:17:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:23:3): vegetariam package vs hillR, taxa alpha diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 2) test_hill_taxa.R:23:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:29:3): vegetariam package vs hillR, taxa beta diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:29:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:41:3): vegetariam package vs hillR, taxa beta diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:41:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:53:3): vegetariam package vs hillR, taxa beta diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:53:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:65:3): vegetariam package vs hillR, taxa beta diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:65:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:77:3): vegetariam package vs hillR, taxa beta diversity, q = 2, two sites ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:77:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 9 | WARN 0 | SKIP 1 | PASS 47 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.5.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [8s/11s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(hillR)
     >
     > test_check("hillR")
    
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     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     ● empty test (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_hill_taxa.R:5:3): vegetariam package vs hillR, taxa alpha diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0) test_hill_taxa.R:5:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:11:3): vegetariam package vs hillR, taxa alpha diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0.9999) test_hill_taxa.R:11:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:17:3): vegetariam package vs hillR, taxa alpha diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 1) test_hill_taxa.R:17:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:23:3): vegetariam package vs hillR, taxa alpha diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 2) test_hill_taxa.R:23:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:29:3): vegetariam package vs hillR, taxa beta diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:29:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:41:3): vegetariam package vs hillR, taxa beta diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:41:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:53:3): vegetariam package vs hillR, taxa beta diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:53:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:65:3): vegetariam package vs hillR, taxa beta diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:65:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:77:3): vegetariam package vs hillR, taxa beta diversity, q = 2, two sites ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:77:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 9 | WARN 0 | SKIP 1 | PASS 47 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.5.0
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(hillR)
     >
     > test_check("hillR")
    
     |
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     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     ● empty test (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_hill_taxa.R:5:3): vegetariam package vs hillR, taxa alpha diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0) test_hill_taxa.R:5:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:11:3): vegetariam package vs hillR, taxa alpha diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0.9999) test_hill_taxa.R:11:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:17:3): vegetariam package vs hillR, taxa alpha diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 1) test_hill_taxa.R:17:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:23:3): vegetariam package vs hillR, taxa alpha diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 2) test_hill_taxa.R:23:2
     2. │ └─base::match.fun(FUN)
     3. └─base::loadNamespace(x)
     4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     5. └─base:::withOneRestart(expr, restarts[[1L]])
     6. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:29:3): vegetariam package vs hillR, taxa beta diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:29:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:41:3): vegetariam package vs hillR, taxa beta diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:41:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:53:3): vegetariam package vs hillR, taxa beta diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:53:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:65:3): vegetariam package vs hillR, taxa beta diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:65:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:77:3): vegetariam package vs hillR, taxa beta diversity, q = 2, two sites ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test_hill_taxa.R:77:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 9 | WARN 0 | SKIP 1 | PASS 47 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.5.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [7s/7s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(hillR)
     >
     > test_check("hillR")
    
     |
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     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     ● empty test (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_hill_taxa.R:5:3): vegetariam package vs hillR, taxa alpha diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0) test_hill_taxa.R:5:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:11:3): vegetariam package vs hillR, taxa alpha diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0.9999) test_hill_taxa.R:11:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:17:3): vegetariam package vs hillR, taxa alpha diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 1) test_hill_taxa.R:17:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:23:3): vegetariam package vs hillR, taxa alpha diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 2) test_hill_taxa.R:23:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:29:3): vegetariam package vs hillR, taxa beta diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:29:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:41:3): vegetariam package vs hillR, taxa beta diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:41:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:53:3): vegetariam package vs hillR, taxa beta diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:53:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:65:3): vegetariam package vs hillR, taxa beta diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:65:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:77:3): vegetariam package vs hillR, taxa beta diversity, q = 2, two sites ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:77:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 9 | WARN 0 | SKIP 1 | PASS 47 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.5.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [10s/10s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(hillR)
     >
     > test_check("hillR")
    
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     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     ● empty test (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_hill_taxa.R:5:3): vegetariam package vs hillR, taxa alpha diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0) test_hill_taxa.R:5:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:11:3): vegetariam package vs hillR, taxa alpha diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0.9999) test_hill_taxa.R:11:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:17:3): vegetariam package vs hillR, taxa alpha diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 1) test_hill_taxa.R:17:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:23:3): vegetariam package vs hillR, taxa alpha diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 2) test_hill_taxa.R:23:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:29:3): vegetariam package vs hillR, taxa beta diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:29:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:41:3): vegetariam package vs hillR, taxa beta diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:41:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:53:3): vegetariam package vs hillR, taxa beta diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:53:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:65:3): vegetariam package vs hillR, taxa beta diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:65:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:77:3): vegetariam package vs hillR, taxa beta diversity, q = 2, two sites ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:77:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 9 | WARN 0 | SKIP 1 | PASS 47 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.5.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [7s/8s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(hillR)
     >
     > test_check("hillR")
    
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     |======== | 11%
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     |======================================================================| 100%
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     ● empty test (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_hill_taxa.R:5:3): vegetariam package vs hillR, taxa alpha diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0) test_hill_taxa.R:5:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:11:3): vegetariam package vs hillR, taxa alpha diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 0.9999) test_hill_taxa.R:11:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:17:3): vegetariam package vs hillR, taxa alpha diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 1) test_hill_taxa.R:17:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:23:3): vegetariam package vs hillR, taxa alpha diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. ├─base::apply(dummy$abun, 1, vegetarian::d, lev = "alpha", q = 2) test_hill_taxa.R:23:2
     2. │ └─base::match.fun(FUN)
     3. └─vegetarian::d
     4. └─base::getExportedValue(pkg, name)
     5. └─base::asNamespace(ns)
     6. └─base::getNamespace(ns)
     7. └─base::loadNamespace(name)
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:29:3): vegetariam package vs hillR, taxa beta diversity, q = 0 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:29:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:41:3): vegetariam package vs hillR, taxa beta diversity, q = 0.9999 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:41:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:53:3): vegetariam package vs hillR, taxa beta diversity, q = 1 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:53:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:65:3): vegetariam package vs hillR, taxa beta diversity, q = 2 ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:65:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test_hill_taxa.R:77:3): vegetariam package vs hillR, taxa beta diversity, q = 2, two sites ──
     Error: there is no package called 'vegetarian'
     Backtrace:
     █
     1. └─vegetarian::d test_hill_taxa.R:77:2
     2. └─base::getExportedValue(pkg, name)
     3. └─base::asNamespace(ns)
     4. └─base::getNamespace(ns)
     5. └─base::loadNamespace(name)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 9 | WARN 0 | SKIP 1 | PASS 47 ]
     Error: Test failures
     Execution halted
Flavor: r-release-linux-x86_64