CRAN Package Check Results for Package GeoFIS

Last updated on 2021-03-22 07:48:23 CET.

Additional issues

M1mac M1mac valgrind

Check Details

Version: 1.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.0
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.0
Check: installed package size
Result: NOTE
     installed size is 10.2Mb
     sub-directories of 1Mb or more:
     libs 8.9Mb
Flavors: r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64

Version: 1.0
Check: examples
Result: ERROR
    Running examples in ‘GeoFIS-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Zoning
    > ### Title: Class "Zoning"
    > ### Aliases: Zoning
    >
    > ### ** Examples
    >
    > library(GeoFIS)
    >
    > data(conductivity_2014)
    > data(conductivity_border)
    > zoning <- NewZoning(conductivity_2014)
    > zoning$border <- conductivity_border
    > zoning$neighborhood <- 5
    > zoning$perform_zoning()
    > map5 <- zoning$map(5)
    >
    > # plot the map
    > library(RColorBrewer)
    > palette <- brewer.pal(3, "Blues")
    > breaks <- c(30, 50, 70, 100)
    > colors <- palette[findInterval(map5$conduct_mean, vec = breaks)]
    > par(mar = c(0, 0, 2, 0))
    > plot(map5, col = colors, main = "Map 5 zones")
    > legend("bottomright", legend = levels(cut(map5$conduct_mean, breaks)),
    + fill = palette, title = "Conductivity mean")
    >
    > # export the map as Shapefile (replace tempdir() with the directory you want to put the map)
    > library(rgdal)
    rgdal: version: 1.5-23, (SVN revision 1121)
    Geospatial Data Abstraction Library extensions to R successfully loaded
    Loaded GDAL runtime: GDAL 2.2.4, released 2018/03/19
    Path to GDAL shared files: /usr/local/share/gdal
    GDAL binary built with GEOS: TRUE
    Loaded PROJ runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
    Path to PROJ shared files: (autodetected)
    Linking to sp version:1.4-5
    > writeOGR(map5, dsn = tempdir(), layer = "map5", driver = "ESRI Shapefile")
    Warning in writeOGR(map5, dsn = tempdir(), layer = "map5", driver = "ESRI Shapefile") :
     Field names abbreviated for ESRI Shapefile driver
    
     *** caught segfault ***
    address 4e554f42, cause 'memory not mapped'
    
    Traceback:
     1: writeOGR(map5, dsn = tempdir(), layer = "map5", driver = "ESRI Shapefile")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Version: 1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘data-fusion.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘data-fusion.Rmd’
    
    Segmentation Fault - core dumped
    --- re-building ‘zoning.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    rgdal: version: 1.5-23, (SVN revision 1121)
    Geospatial Data Abstraction Library extensions to R successfully loaded
    Loaded GDAL runtime: GDAL 2.2.4, released 2018/03/19
    Path to GDAL shared files: /usr/local/share/gdal
    GDAL binary built with GEOS: TRUE
    Loaded PROJ runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
    Path to PROJ shared files: (autodetected)
    Linking to sp version:1.4-5
    Warning in writeOGR(map5, dsn = ".", layer = "map5", driver = "ESRI Shapefile") :
     Field names abbreviated for ESRI Shapefile driver
    
     *** caught segfault ***
    address 4e554f42, cause 'memory not mapped'
    
    Traceback:
     1: writeOGR(map5, dsn = ".", layer = "map5", driver = "ESRI Shapefile")
     2: eval(expr, envir, enclos)
     3: eval(expr, envir, enclos)
     4: withVisible(eval(expr, envir, enclos))
     5: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
     6: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
     7: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
     8: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
     9: evaluate::evaluate(...)
    10: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    11: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    12: block_exec(params)
    13: call_block(x)
    14: process_group.block(group)
    15: process_group(group)
    16: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    17: process_file(text, output)
    18: knit(input, text = text, envir = envir, quiet = quiet)
    19: knit2html(..., force_v1 = TRUE)
    20: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
    21: vweave(...)
    22: engine$weave(file, quiet = quiet, encoding = enc)
    23: doTryCatch(return(expr), name, parentenv, handler)
    24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    25: tryCatchList(expr, classes, parentenv, handlers)
    26: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
    27: tools:::.buildOneVignette("zoning.Rmd", "/home/ripley/R/packages/tests32/GeoFIS.Rcheck/vign_test/GeoFIS", TRUE, FALSE, "zoning", "UTF-8", "/tmp/RtmpHKaqSa/working_dir/RtmpRuaGRK/file495c4c444ef1.rds")
    An irrecoverable exception occurred. R is aborting now ...
    SUMMARY: processing the following file failed:
     ‘zoning.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86