Last updated on 2021-03-24 06:47:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.1 | 3.60 | 53.51 | 57.11 | NOTE | --no-vignettes |
| r-devel-linux-x86_64-debian-gcc | 1.3.1 | 2.81 | 48.30 | 51.11 | OK | --no-vignettes |
| r-devel-linux-x86_64-fedora-clang | 1.3.1 | 99.80 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.1 | 87.85 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.3.1 | 7.00 | 86.00 | 93.00 | OK | --no-vignettes |
| r-devel-windows-x86_64-gcc10-UCRT | 1.3.1 | OK | ||||
| r-patched-linux-x86_64 | 1.3.1 | 3.37 | 58.67 | 62.04 | OK | --no-vignettes |
| r-patched-solaris-x86 | 1.3.1 | 112.80 | OK | --no-vignettes | ||
| r-release-linux-x86_64 | 1.3.1 | 3.23 | 58.01 | 61.24 | OK | --no-vignettes |
| r-release-macos-x86_64 | 1.3.1 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.3.1 | 8.00 | 11.00 | 19.00 | ERROR | --no-vignettes |
| r-oldrel-macos-x86_64 | 1.3.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3.1 | 4.00 | 289.00 | 293.00 | OK | --no-vignettes |
Version: 1.3.1
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'DESeq2'
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.1
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: 'DESeq2'
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘GlobalAncova’
Flavor: r-release-macos-x86_64
Version: 1.3.1
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘GlobalAncova’
Flavor: r-release-macos-x86_64
Version: 1.3.1
Check: examples
Result: ERROR
Running examples in ‘GiANT-Ex.R’ failed
The error most likely occurred in:
> ### Name: GiANT-package
> ### Title: Enrichment analysis
> ### Aliases: GiANT
>
> ### ** Examples
>
> # load data
> require(GlobalAncova)
Loading required package: GlobalAncova
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘GlobalAncova’
> data(vantVeer)
Warning in data(vantVeer) : data set ‘vantVeer’ not found
> data(phenodata)
Warning in data(phenodata) : data set ‘phenodata’ not found
> data(pathways)
Warning in data(pathways) : data set ‘pathways’ not found
>
> ##################################
> # Example 1: gene set analysis #
> ##################################
> res <- geneSetAnalysis(
+ # parameters for geneSetAnalysis
+ dat = vantVeer,
+ geneSets = pathways[1],
+ analysis = analysis.averageCorrelation(),
+ adjustmentMethod = "fdr",
+ # additional parameters for analysis.averageCorrelation
+ labs = phenodata$metastases,
+ method = "pearson",
+ numSamples = 50)
Error in geneSetAnalysis(dat = vantVeer, geneSets = pathways[1], analysis = analysis.averageCorrelation(), :
object 'pathways' not found
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.3.1
Flags: --no-vignettes
Check: whether package can be installed
Result: ERROR
See * DONE
Flavor: r-release-windows-ix86+x86_64