Last updated on 2021-03-24 16:51:26 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 12.52 | 154.29 | 166.81 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 10.49 | 114.85 | 125.34 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 196.46 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 196.67 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.1.0 | 32.00 | 206.00 | 238.00 | ERROR | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.1.0 | ERROR | ||||
| r-patched-linux-x86_64 | 0.1.0 | 11.81 | 145.58 | 157.39 | OK | |
| r-patched-solaris-x86 | 0.1.0 | 241.60 | NOTE | |||
| r-release-linux-x86_64 | 0.1.0 | 10.91 | 144.64 | 155.55 | OK | |
| r-release-macos-x86_64 | 0.1.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.1.0 | 31.00 | 191.00 | 222.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.1.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.0 | 19.00 | 141.00 | 160.00 | ERROR |
Version: 0.1.0
Check: installed package size
Result: NOTE
installed size is 10.1Mb
sub-directories of 1Mb or more:
data 10.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [82s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> testthat::context("hct")
> Sys.setenv("R_TESTS" = "")
> library(HCT)
Loading required package: rstan
Loading required package: StanHeaders
Loading required package: ggplot2
rstan (Version 2.21.2, GitRev: 2e1f913d3ca3)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file
Attaching package: 'HCT'
The following object is masked from 'package:base':
summary
> als=data.frame(
+ estimate=c(-1.13, -1.01, -0.96, -1, -1.04, -1, -0.83, -1.04, -0.99, -1.05,
+ -1.14, -1.08, -0.92, -1.16, -0.93, -0.99),
+ SE=c(0.05, 0.04, 0.16, 0.12, 0.05, 0.11, 0.02, 0.03, 0.03, 0.06,
+ 0.06, 0.03, 0.05, 0.04, 0.06, 0.05),
+ N=c(350, 730, 83, 83, 287, 90, 1193, 859, 583, 227, 279, 510, 185,
+ 468, 127, 206))
> ts=hct(als,'estimate','SE','N',rseed=322)
DIAGNOSTIC(S) FROM PARSER:
Info: Comments beginning with # are deprecated. Please use // in place of # for line comments.
make cmd is
make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/etc/x64/Makevars.site" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file156c7dca78ab.dll" WIN=64 TCLBIN=64 OBJECTS="file156c7dca78ab.o"
make would use
make[1]: Entering directory '/d/temp/RtmpM7XBNf'
if test "zfile156c7dca78ab.o" != "z"; then \
if test -e "file156c7dca78ab-win.def"; then \
echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file156c7dca78ab.dll file156c7dca78ab-win.def file156c7dca78ab.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file156c7dca78ab.dll file156c7dca78ab-win.def file156c7dca78ab.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
d:/Compiler/rtools40/mingw64/bin/nm file156c7dca78ab.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file156c7dca78ab.dll tmp.def file156c7dca78ab.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file156c7dca78ab.dll tmp.def file156c7dca78ab.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
make[1]: Leaving directory '/d/temp/RtmpM7XBNf'
Error in compileCode(f, code, language = language, verbose = verbose) :
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file156c7dca78ab.o:file156c7dca78ab.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file156c7dca78ab.o:file156c7dca78ab.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file156c7dca78ab.o:file156c7dca78ab.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observ
Calls: hct ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
Error in sink(type = "output") : invalid connection
Calls: hct ... <Anonymous> -> stan_model -> cxxfunctionplus -> sink
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 0.1.0
Check: tests
Result: ERROR
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
g++ -shared -s -static-libgcc -o file6740114a8be.dll file6740114a8be-win.def file6740114a8be.o -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib/x64" -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib" -L"C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
nm file6740114a8be.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo g++ -shared -s -static-libgcc -o file6740114a8be.dll tmp.def file6740114a8be.o -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib/x64" -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib" -L"C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file6740114a8be.dll tmp.def file6740114a8be.o -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib/x64" -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib" -L"C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
Error in compileCode(f, code, language = language, verbose = verbose) :
ld: file6740114a8be.o:file6740114a8be.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x18): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'ld: file6740114a8be.o:file6740114a8be.cpp:(.text.startup+0x84d5): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'ld: file6740114a8be.o:file6740114a8be.cpp:(.text.startup+0x8d6f): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'ld: file6740114a8be.o:file6740114a8be.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1d): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'ld: file6740114a8be.o:file6740114a8be.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x20): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'ld: file6740114
Calls: hct ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
Error in sink(type = "output") : invalid connection
Calls: hct ... <Anonymous> -> stan_model -> cxxfunctionplus -> sink
Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 0.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [78s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> testthat::context("hct")
> Sys.setenv("R_TESTS" = "")
> library(HCT)
Loading required package: rstan
Loading required package: StanHeaders
Loading required package: ggplot2
rstan (Version 2.21.2, GitRev: 2e1f913d3ca3)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file
Attaching package: 'HCT'
The following object is masked from 'package:base':
summary
> als=data.frame(
+ estimate=c(-1.13, -1.01, -0.96, -1, -1.04, -1, -0.83, -1.04, -0.99, -1.05,
+ -1.14, -1.08, -0.92, -1.16, -0.93, -0.99),
+ SE=c(0.05, 0.04, 0.16, 0.12, 0.05, 0.11, 0.02, 0.03, 0.03, 0.06,
+ 0.06, 0.03, 0.05, 0.04, 0.06, 0.05),
+ N=c(350, 730, 83, 83, 287, 90, 1193, 859, 583, 227, 279, 510, 185,
+ 468, 127, 206))
> ts=hct(als,'estimate','SE','N',rseed=322)
DIAGNOSTIC(S) FROM PARSER:
Info: Comments beginning with # are deprecated. Please use // in place of # for line comments.
make cmd is
make -f "D:/RCompile/recent/R-40~1.4/etc/x64/Makeconf" -f "D:/RCompile/recent/R-40~1.4/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-40~1.4/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="fileb8602e0c1613.dll" WIN=64 TCLBIN=64 OBJECTS="fileb8602e0c1613.o"
make would use
make[1]: Entering directory '/d/temp/RtmpAr6oJG'
if test "zfileb8602e0c1613.o" != "z"; then \
if test -e "fileb8602e0c1613-win.def"; then \
echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fileb8602e0c1613.dll fileb8602e0c1613-win.def fileb8602e0c1613.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.4/bin/x64" -lR ; \
d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fileb8602e0c1613.dll fileb8602e0c1613-win.def fileb8602e0c1613.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.4/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
d:/Compiler/rtools40/mingw64/bin/nm fileb8602e0c1613.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fileb8602e0c1613.dll tmp.def fileb8602e0c1613.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.4/bin/x64" -lR ; \
d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fileb8602e0c1613.dll tmp.def fileb8602e0c1613.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.4/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
make[1]: Leaving directory '/d/temp/RtmpAr6oJG'
Error in compileCode(f, code, language = language, verbose = verbose) :
D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: fileb8602e0c1613.o:fileb8602e0c1613.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: fileb8602e0c1613.o:fileb8602e0c1613.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: fileb8602e0c1613.o:fileb8602e0c1613.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_obser
Calls: hct ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
Error in sink(type = "output") : invalid connection
Calls: hct ... <Anonymous> -> stan_model -> cxxfunctionplus -> sink
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 0.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [59s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> testthat::context("hct")
> Sys.setenv("R_TESTS" = "")
> library(HCT)
Loading required package: rstan
Loading required package: StanHeaders
Loading required package: ggplot2
rstan (Version 2.21.2, GitRev: 2e1f913d3ca3)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file
Attaching package: 'HCT'
The following object is masked from 'package:base':
summary
> als=data.frame(
+ estimate=c(-1.13, -1.01, -0.96, -1, -1.04, -1, -0.83, -1.04, -0.99, -1.05,
+ -1.14, -1.08, -0.92, -1.16, -0.93, -0.99),
+ SE=c(0.05, 0.04, 0.16, 0.12, 0.05, 0.11, 0.02, 0.03, 0.03, 0.06,
+ 0.06, 0.03, 0.05, 0.04, 0.06, 0.05),
+ N=c(350, 730, 83, 83, 287, 90, 1193, 859, 583, 227, 279, 510, 185,
+ 468, 127, 206))
> ts=hct(als,'estimate','SE','N',rseed=322)
DIAGNOSTIC(S) FROM PARSER:
Info: Comments beginning with # are deprecated. Please use // in place of # for line comments.
make cmd is
make -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-36~1.3/share/make/winshlib.mk" CXX='$(CXX11) $(CXX11STD)' CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)' SHLIB="file1318c673209e.dll" WIN=64 TCLBIN=64 OBJECTS="file1318c673209e.o"
make would use
make[1]: Entering directory `/cygdrive/d/temp/RtmpKk1d8g'
if test "zfile1318c673209e.o" != "z"; then \
if test -e "file1318c673209e-win.def"; then \
echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file1318c673209e.dll file1318c673209e-win.def file1318c673209e.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file1318c673209e.dll file1318c673209e-win.def file1318c673209e.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
d:/Compiler/gcc-4.9.3/mingw_64/bin/nm file1318c673209e.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file1318c673209e.dll tmp.def file1318c673209e.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file1318c673209e.dll tmp.def file1318c673209e.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
make[1]: Leaving directory `/cygdrive/d/temp/RtmpKk1d8g'
Error in compileCode(f, code, language = language, verbose = verbose) :
file1318c673209e.o:file1318c673209e.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file1318c673209e.o:file1318c673209e.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file1318c673209e.o:file1318c673209e.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file1318c673209e.o:file1318c673209e.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file1318c673209e.o:file1318c673209e.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_
Calls: hct ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
Error in sink(type = "output") : invalid connection
Calls: hct ... <Anonymous> -> stan_model -> cxxfunctionplus -> sink
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64