CRAN Package Check Results for Package foster

Last updated on 2021-03-28 08:50:52 CEST.

Check Details

Version: 0.1.0
Check: dependencies in R code
Result: WARN
    Missing or unexported object: 'spatstat::crossdist'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-x86_64-gcc10-UCRT

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in 'foster-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: getSample
    > ### Title: Stratified random sampling
    > ### Aliases: getSample
    >
    > ### ** Examples
    >
    > # Load raster package
    > library(raster)
    Loading required package: sp
    >
    > # Open and stack ALS metrics
    > elev_p95 <- raster(system.file("extdata/examples/ALS_metrics_p95.tif",package="foster"))
    > cover <- raster(system.file("extdata/examples/ALS_metrics_cov_mean.tif",package="foster"))
    > Y_vars <- stack(elev_p95,cover)
    > names(Y_vars) <- c("p95","cover")
    >
    > # Sample 5 cells in 3 strata (kmeans clusters). Sampled points should be at least 30 m apart.
    > set.seed(1234) #for example reproducibility
    > sample_strata <- getSample(Y_vars,
    + n = 5,
    + strata = 3,
    + mindist = 30)
    cluster 2: 3 samples to select
    Error: 'crossdist' is not an exported object from 'namespace:spatstat'
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'foster-example.Rmd' using rmarkdown
    Quitting from lines 368-380 (foster-example.Rmd)
    Error: processing vignette 'foster-example.Rmd' failed with diagnostics:
    'crossdist' is not an exported object from 'namespace:spatstat'
    --- failed re-building 'foster-example.Rmd'
    
    SUMMARY: processing the following file failed:
     'foster-example.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.0
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-x86_64-gcc10-UCRT

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in ‘foster-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: getSample
    > ### Title: Stratified random sampling
    > ### Aliases: getSample
    >
    > ### ** Examples
    >
    > # Load raster package
    > library(raster)
    Loading required package: sp
    >
    > # Open and stack ALS metrics
    > elev_p95 <- raster(system.file("extdata/examples/ALS_metrics_p95.tif",package="foster"))
    > cover <- raster(system.file("extdata/examples/ALS_metrics_cov_mean.tif",package="foster"))
    > Y_vars <- stack(elev_p95,cover)
    > names(Y_vars) <- c("p95","cover")
    >
    > # Sample 5 cells in 3 strata (kmeans clusters). Sampled points should be at least 30 m apart.
    > set.seed(1234) #for example reproducibility
    > sample_strata <- getSample(Y_vars,
    + n = 5,
    + strata = 3,
    + mindist = 30)
    cluster 2: 3 samples to select
    Error: 'crossdist' is not an exported object from 'namespace:spatstat'
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘foster-example.Rmd’ using rmarkdown
    Quitting from lines 368-380 (foster-example.Rmd)
    Error: processing vignette 'foster-example.Rmd' failed with diagnostics:
    'crossdist' is not an exported object from 'namespace:spatstat'
    --- failed re-building ‘foster-example.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘foster-example.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: ‘spatstat::crossdist’
Flavors: r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘foster-example.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 368-380 (foster-example.Rmd)
    Error: processing vignette 'foster-example.Rmd' failed with diagnostics:
    'crossdist' is not an exported object from 'namespace:spatstat'
    --- failed re-building ‘foster-example.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘foster-example.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86