Last updated on 2021-04-15 17:47:56 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.6 | 10.36 | 93.75 | 104.11 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.6 | 8.18 | 71.07 | 79.25 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.6 | 144.72 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.6 | 133.20 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.1.6 | 25.00 | 117.00 | 142.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.1.6 | OK | ||||
| r-patched-linux-x86_64 | 1.1.6 | 9.30 | 86.87 | 96.17 | OK | |
| r-patched-solaris-x86 | 1.1.6 | 186.40 | OK | |||
| r-release-linux-x86_64 | 1.1.6 | 8.95 | 87.51 | 96.46 | OK | |
| r-release-macos-x86_64 | 1.1.6 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.1.6 | 20.00 | 106.00 | 126.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.6 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.6 | 19.00 | 84.00 | 103.00 | OK |
Version: 1.1.6
Check: examples
Result: ERROR
Running examples in ‘YuGene-Ex.R’ failed
The error most likely occurred in:
> ### Name: pca.YuGene
> ### Title: Principal component analysis for the 'YuGene' class.
> ### Aliases: pca pca.YuGene
>
> ### ** Examples
>
> #load data
> data(array)
>
> YuGene.data=t(YuGene(t(array$data.all))) # transpose the data to get the samples in columns
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>
> #PCA on YuGene data, centered by study
> res.pca.yugene.center = pca(YuGene.data, ncomp = 3, scale = TRUE,
+ center = TRUE, study = array$experiment.all)
> expl.var = round(res.pca.yugene.center$sdev/sum(res.pca.yugene.center$sdev),4)*100
>
> #plot of the results, one color per cell-type, one shape per study
> plot(res.pca.yugene.center$x[,1],res.pca.yugene.center$x[,2],
+ pch = as.numeric(array$experiment.all),
+ col = as.numeric(array$type.all)+1, lwd = 2,
+ cex = 1.5, cex.lab = 1.5,xlab=paste("PC1:",expl.var[1],"%"),
+ ylab=paste("PC2:",expl.var[2],"%"))
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Error in plot.window(...) : need finite 'xlim' values
Calls: plot -> plot.default -> localWindow -> plot.window
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: package ‘mixOmics’ was built under R version 3.6.1
Flavor: r-oldrel-macos-x86_64