Last updated on 2021-04-30 08:48:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.5 | 8.29 | 73.78 | 82.07 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.6.5 | 6.26 | 55.00 | 61.26 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6.5 | 112.10 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.6.5 | 94.69 | ERROR | |||
| r-devel-windows-x86_64-gcc10-UCRT | 0.6.5 | ERROR | ||||
| r-patched-linux-x86_64 | 0.6.5 | 8.93 | 69.77 | 78.70 | ERROR | |
| r-patched-solaris-x86 | 0.6.5 | 146.00 | ERROR | |||
| r-release-linux-x86_64 | 0.6.5 | 8.25 | 69.01 | 77.26 | ERROR | |
| r-release-macos-x86_64 | 0.6.5 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.6.5 | 13.00 | 86.00 | 99.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.6.5 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.6.5 | 16.00 | 105.00 | 121.00 | ERROR |
Version: 0.6.5
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64
Version: 0.6.5
Check: examples
Result: ERROR
Running examples in 'traitdataform-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cast.traitdata
> ### Title: Cast long-table trait data into wide-table format
> ### Aliases: cast.traitdata
>
> ### ** Examples
>
>
> pulldata("arthropodtraits")
Direct call to data source failed. Please check internet connectivity and re-load data!
> head(arthropodtraits)
Error in head(arthropodtraits) : object 'arthropodtraits' not found
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.6.5
Check: tests
Result: ERROR
Running 'testthat.R' [4s/31s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(traitdataform)
>
> test_check("traitdataform")
â<c2><95><c2><90>â<c2><95><c2><90> Failed tests â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>â<c2><95><c2><90>
â<c2><94><c2><80>â<c2><94><c2><80> Error (test.columns_to_ETS.R:6:1): (code run outside of `test_that()`) â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>
Error: duplicate 'row.names' are not allowed
Backtrace:
â<c2><96><c2><88>
1. â<c2><94><c2><9c>â<c2><94><c2><80>traitdataform::pulldata("carabids") test.columns_to_ETS.R:6:0
2. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::tryCatch(...)
3. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::tryCatchList(expr, classes, parentenv, handlers)
4. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::doTryCatch(return(expr), name, parentenv, handler)
6. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::withVisible(eval(ei, envir))
9. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::eval(ei, envir)
10. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::eval(ei, envir)
11. â<c2><94><c2><94>â<c2><94><c2><80>utils::read.delim(...)
12. â<c2><94><c2><94>â<c2><94><c2><80>utils::read.table(...)
â<c2><94><c2><80>â<c2><94><c2><80> Error (test.map_gbif_taxonomy.R:6:1): (code run outside of `test_that()`) â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>
Error: duplicate 'row.names' are not allowed
Backtrace:
â<c2><96><c2><88>
1. â<c2><94><c2><9c>â<c2><94><c2><80>traitdataform::pulldata("carabids") test.map_gbif_taxonomy.R:6:0
2. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::tryCatch(...)
3. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::tryCatchList(expr, classes, parentenv, handlers)
4. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::doTryCatch(return(expr), name, parentenv, handler)
6. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::withVisible(eval(ei, envir))
9. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::eval(ei, envir)
10. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::eval(ei, envir)
11. â<c2><94><c2><94>â<c2><94><c2><80>utils::read.delim(...)
12. â<c2><94><c2><94>â<c2><94><c2><80>utils::read.table(...)
â<c2><94><c2><80>â<c2><94><c2><80> Error (test.standardize.R:6:3): mapping of taxa works â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>
Error: duplicate 'row.names' are not allowed
Backtrace:
â<c2><96><c2><88>
1. â<c2><94><c2><9c>â<c2><94><c2><80>traitdataform::pulldata("carabids") test.standardize.R:6:2
2. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::tryCatch(...)
3. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::tryCatchList(expr, classes, parentenv, handlers)
4. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::doTryCatch(return(expr), name, parentenv, handler)
6. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::withVisible(eval(ei, envir))
9. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::eval(ei, envir)
10. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::eval(ei, envir)
11. â<c2><94><c2><94>â<c2><94><c2><80>utils::read.delim(...)
12. â<c2><94><c2><94>â<c2><94><c2><80>utils::read.table(...)
â<c2><94><c2><80>â<c2><94><c2><80> Error (test.standardize.R:73:3): unit conversion works â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>
Error: duplicate 'row.names' are not allowed
Backtrace:
â<c2><96><c2><88>
1. â<c2><94><c2><9c>â<c2><94><c2><80>traitdataform::pulldata("carabids") test.standardize.R:73:2
2. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::tryCatch(...)
3. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::tryCatchList(expr, classes, parentenv, handlers)
4. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. â<c2><94><c2><82> â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base:::doTryCatch(return(expr), name, parentenv, handler)
6. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. â<c2><94><c2><82> â<c2><94><c2><9c>â<c2><94><c2><80>base::withVisible(eval(ei, envir))
9. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::eval(ei, envir)
10. â<c2><94><c2><82> â<c2><94><c2><94>â<c2><94><c2><80>base::eval(ei, envir)
11. â<c2><94><c2><94>â<c2><94><c2><80>utils::read.delim(...)
12. â<c2><94><c2><94>â<c2><94><c2><80>utils::read.table(...)
â<c2><94><c2><80>â<c2><94><c2><80> Error (test.standardize.R:80:3): factor level harmonization works â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>â<c2><94><c2><80>
Error: object 'arthropodtraits' not found
Backtrace:
â<c2><96><c2><88>
1. â<c2><94><c2><94>â<c2><94><c2><80>traitdataform::as.traitdata(...) test.standardize.R:80:2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'traitdataform.Rmd' using rmarkdown
Quitting from lines 53-57 (traitdataform.Rmd)
Error: processing vignette 'traitdataform.Rmd' failed with diagnostics:
duplicate 'row.names' are not allowed
--- failed re-building 'traitdataform.Rmd'
SUMMARY: processing the following file failed:
'traitdataform.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.6.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(traitdataform)
>
> test_check("traitdataform")
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test.columns_to_ETS.R:6:1): (code run outside of `test_that()`) ──────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.columns_to_ETS.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.map_gbif_taxonomy.R:6:1): (code run outside of `test_that()`) ───
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.map_gbif_taxonomy.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:6:3): mapping of taxa works ───────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:6:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:73:3): unit conversion works ──────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:73:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:80:3): factor level harmonization works ───────────
Error: object 'arthropodtraits' not found
Backtrace:
█
1. └─traitdataform::as.traitdata(...) test.standardize.R:80:2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.5
Check: examples
Result: ERROR
Running examples in ‘traitdataform-Ex.R’ failed
The error most likely occurred in:
> ### Name: cast.traitdata
> ### Title: Cast long-table trait data into wide-table format
> ### Aliases: cast.traitdata
>
> ### ** Examples
>
>
> pulldata("arthropodtraits")
Direct call to data source failed. Please check internet connectivity and re-load data!
> head(arthropodtraits)
Error in head(arthropodtraits) : object 'arthropodtraits' not found
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.6.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(traitdataform)
>
> test_check("traitdataform")
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test.columns_to_ETS.R:6:1): (code run outside of `test_that()`) ──────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.columns_to_ETS.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.map_gbif_taxonomy.R:6:1): (code run outside of `test_that()`) ───
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.map_gbif_taxonomy.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:6:3): mapping of taxa works ───────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:6:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:73:3): unit conversion works ──────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:73:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:80:3): factor level harmonization works ───────────
Error: object 'arthropodtraits' not found
Backtrace:
█
1. └─traitdataform::as.traitdata(...) test.standardize.R:80:2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64
Version: 0.6.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘traitdataform.Rmd’ using rmarkdown
Quitting from lines 53-57 (traitdataform.Rmd)
Error: processing vignette 'traitdataform.Rmd' failed with diagnostics:
duplicate 'row.names' are not allowed
--- failed re-building ‘traitdataform.Rmd’
SUMMARY: processing the following file failed:
‘traitdataform.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.6.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(traitdataform)
>
> test_check("traitdataform")
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test.columns_to_ETS.R:6:1): (code run outside of `test_that()`) ──────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.columns_to_ETS.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.map_gbif_taxonomy.R:6:1): (code run outside of `test_that()`) ───
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.map_gbif_taxonomy.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:6:3): mapping of taxa works ───────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:6:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:73:3): unit conversion works ──────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:73:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:80:3): factor level harmonization works ───────────
Error: object 'arthropodtraits' not found
Backtrace:
█
1. └─traitdataform::as.traitdata(...) test.standardize.R:80:2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.6.5
Check: tests
Result: ERROR
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
7. | \-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. | +-base::withVisible(eval(ei, envir))
9. | \-base::eval(ei, envir)
10. | \-base::eval(ei, envir)
11. \-utils::read.delim(...)
12. \-utils::read.table(...)
-- Error (test.standardize.R:80:3): factor level harmonization works -----------
Error: object 'arthropodtraits' not found
Backtrace:
x
1. \-traitdataform::as.traitdata(...) test.standardize.R:80:2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 0.6.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/130s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(traitdataform)
>
> test_check("traitdataform")
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test.columns_to_ETS.R:6:1): (code run outside of `test_that()`) ──────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.columns_to_ETS.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.map_gbif_taxonomy.R:6:1): (code run outside of `test_that()`) ───
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.map_gbif_taxonomy.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:6:3): mapping of taxa works ───────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:6:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:73:3): unit conversion works ──────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:73:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:80:3): factor level harmonization works ───────────
Error: object 'arthropodtraits' not found
Backtrace:
█
1. └─traitdataform::as.traitdata(...) test.standardize.R:80:2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.6.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘traitdataform.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 53-57 (traitdataform.Rmd)
Error: processing vignette 'traitdataform.Rmd' failed with diagnostics:
duplicate 'row.names' are not allowed
--- failed re-building ‘traitdataform.Rmd’
SUMMARY: processing the following file failed:
‘traitdataform.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.6.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(traitdataform)
>
> test_check("traitdataform")
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test.columns_to_ETS.R:6:1): (code run outside of `test_that()`) ──────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.columns_to_ETS.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.map_gbif_taxonomy.R:6:1): (code run outside of `test_that()`) ───
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.map_gbif_taxonomy.R:6:0
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:6:3): mapping of taxa works ───────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:6:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:73:3): unit conversion works ──────────────────────
Error: duplicate 'row.names' are not allowed
Backtrace:
█
1. ├─traitdataform::pulldata("carabids") test.standardize.R:73:2
2. │ ├─base::tryCatch(...)
3. │ │ └─base:::tryCatchList(expr, classes, parentenv, handlers)
4. │ │ └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ │ └─base:::doTryCatch(return(expr), name, parentenv, handler)
6. │ ├─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. │ └─base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. │ ├─base::withVisible(eval(ei, envir))
9. │ └─base::eval(ei, envir)
10. │ └─base::eval(ei, envir)
11. └─utils::read.delim(...)
12. └─utils::read.table(...)
── Error (test.standardize.R:80:3): factor level harmonization works ───────────
Error: object 'arthropodtraits' not found
Backtrace:
█
1. └─traitdataform::as.traitdata(...) test.standardize.R:80:2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.6.5
Check: tests
Result: ERROR
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(traitdataform)
>
> test_check("traitdataform")
== Failed tests ================================================================
-- Error (test.columns_to_ETS.R:6:1): (code run outside of `test_that()`) ------
Error: duplicate 'row.names' are not allowed
Backtrace:
x
1. +-traitdataform::pulldata("carabids") test.columns_to_ETS.R:6:0
2. | +-base::tryCatch(...)
3. | | \-base:::tryCatchList(expr, classes, parentenv, handlers)
4. | | \-base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | | \-base:::doTryCatch(return(expr), name, parentenv, handler)
6. | +-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. | \-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. | +-base::withVisible(eval(ei, envir))
9. | \-base::eval(ei, envir)
10. | \-base::eval(ei, envir)
11. \-utils::read.delim(...)
12. \-utils::read.table(...)
-- Error (test.map_gbif_taxonomy.R:6:1): (code run outside of `test_that()`) ---
Error: duplicate 'row.names' are not allowed
Backtrace:
x
1. +-traitdataform::pulldata("carabids") test.map_gbif_taxonomy.R:6:0
2. | +-base::tryCatch(...)
3. | | \-base:::tryCatchList(expr, classes, parentenv, handlers)
4. | | \-base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | | \-base:::doTryCatch(return(expr), name, parentenv, handler)
6. | +-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. | \-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. | +-base::withVisible(eval(ei, envir))
9. | \-base::eval(ei, envir)
10. | \-base::eval(ei, envir)
11. \-utils::read.delim(...)
12. \-utils::read.table(...)
-- Error (test.standardize.R:6:3): mapping of taxa works -----------------------
Error: duplicate 'row.names' are not allowed
Backtrace:
x
1. +-traitdataform::pulldata("carabids") test.standardize.R:6:2
2. | +-base::tryCatch(...)
3. | | \-base:::tryCatchList(expr, classes, parentenv, handlers)
4. | | \-base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | | \-base:::doTryCatch(return(expr), name, parentenv, handler)
6. | +-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. | \-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. | +-base::withVisible(eval(ei, envir))
9. | \-base::eval(ei, envir)
10. | \-base::eval(ei, envir)
11. \-utils::read.delim(...)
12. \-utils::read.table(...)
-- Error (test.standardize.R:73:3): unit conversion works ----------------------
Error: duplicate 'row.names' are not allowed
Backtrace:
x
1. +-traitdataform::pulldata("carabids") test.standardize.R:73:2
2. | +-base::tryCatch(...)
3. | | \-base:::tryCatchList(expr, classes, parentenv, handlers)
4. | | \-base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | | \-base:::doTryCatch(return(expr), name, parentenv, handler)
6. | +-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. | \-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. | +-base::withVisible(eval(ei, envir))
9. | \-base::eval(ei, envir)
10. | \-base::eval(ei, envir)
11. \-utils::read.delim(...)
12. \-utils::read.table(...)
-- Error (test.standardize.R:80:3): factor level harmonization works -----------
Error: object 'arthropodtraits' not found
Backtrace:
x
1. \-traitdataform::as.traitdata(...) test.standardize.R:80:2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 0.6.5
Check: tests
Result: ERROR
Running 'testthat.R' [14s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(traitdataform)
>
> test_check("traitdataform")
== Failed tests ================================================================
-- Error (test.columns_to_ETS.R:6:1): (code run outside of `test_that()`) ------
Error: duplicate 'row.names' are not allowed
Backtrace:
x
1. +-traitdataform::pulldata("carabids") test.columns_to_ETS.R:6:0
2. | +-base::tryCatch(...)
3. | | \-base:::tryCatchList(expr, classes, parentenv, handlers)
4. | | \-base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | | \-base:::doTryCatch(return(expr), name, parentenv, handler)
6. | +-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. | \-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. | +-base::withVisible(eval(ei, envir))
9. | \-base::eval(ei, envir)
10. | \-base::eval(ei, envir)
11. \-utils::read.delim(...)
12. \-utils::read.table(...)
-- Error (test.map_gbif_taxonomy.R:6:1): (code run outside of `test_that()`) ---
Error: duplicate 'row.names' are not allowed
Backtrace:
x
1. +-traitdataform::pulldata("carabids") test.map_gbif_taxonomy.R:6:0
2. | +-base::tryCatch(...)
3. | | \-base:::tryCatchList(expr, classes, parentenv, handlers)
4. | | \-base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | | \-base:::doTryCatch(return(expr), name, parentenv, handler)
6. | +-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. | \-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. | +-base::withVisible(eval(ei, envir))
9. | \-base::eval(ei, envir)
10. | \-base::eval(ei, envir)
11. \-utils::read.delim(...)
12. \-utils::read.table(...)
-- Error (test.standardize.R:6:3): mapping of taxa works -----------------------
Error: duplicate 'row.names' are not allowed
Backtrace:
x
1. +-traitdataform::pulldata("carabids") test.standardize.R:6:2
2. | +-base::tryCatch(...)
3. | | \-base:::tryCatchList(expr, classes, parentenv, handlers)
4. | | \-base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | | \-base:::doTryCatch(return(expr), name, parentenv, handler)
6. | +-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. | \-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. | +-base::withVisible(eval(ei, envir))
9. | \-base::eval(ei, envir)
10. | \-base::eval(ei, envir)
11. \-utils::read.delim(...)
12. \-utils::read.table(...)
-- Error (test.standardize.R:73:3): unit conversion works ----------------------
Error: duplicate 'row.names' are not allowed
Backtrace:
x
1. +-traitdataform::pulldata("carabids") test.standardize.R:73:2
2. | +-base::tryCatch(...)
3. | | \-base:::tryCatchList(expr, classes, parentenv, handlers)
4. | | \-base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. | | \-base:::doTryCatch(return(expr), name, parentenv, handler)
6. | +-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
7. | \-base::source(system.file("extdata", paste0(x, ".R"), package = "traitdataform"))
8. | +-base::withVisible(eval(ei, envir))
9. | \-base::eval(ei, envir)
10. | \-base::eval(ei, envir)
11. \-utils::read.delim(...)
12. \-utils::read.table(...)
-- Error (test.standardize.R:80:3): factor level harmonization works -----------
Error: object 'arthropodtraits' not found
Backtrace:
x
1. \-traitdataform::as.traitdata(...) test.standardize.R:80:2
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64