Error(s) in re-building vignettes:
  ...
--- re-building 'AMR.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "patient_id"
Quitting from lines 161-162 (AMR.Rmd) 
Error: processing vignette 'AMR.Rmd' failed with diagnostics:
invalid value 0 for 'digits' argument
--- failed re-building 'AMR.Rmd'

--- re-building 'MDR.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 99-102 (MDR.Rmd) 
Error: processing vignette 'MDR.Rmd' failed with diagnostics:
invalid value 0 for 'digits' argument
--- failed re-building 'MDR.Rmd'

--- re-building 'datasets.Rmd' using rmarkdown
--- finished re-building 'datasets.Rmd'

--- re-building 'welcome_to_AMR.Rmd' using rmarkdown
--- finished re-building 'welcome_to_AMR.Rmd'

SUMMARY: processing the following files failed:
  'AMR.Rmd' 'MDR.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘AMR.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "patient_id"
Quitting from lines 161-162 (AMR.Rmd) 
Error: processing vignette 'AMR.Rmd' failed with diagnostics:
invalid value 0 for 'digits' argument
--- failed re-building ‘AMR.Rmd’

--- re-building ‘MDR.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 99-102 (MDR.Rmd) 
Error: processing vignette 'MDR.Rmd' failed with diagnostics:
invalid value 0 for 'digits' argument
--- failed re-building ‘MDR.Rmd’

--- re-building ‘datasets.Rmd’ using rmarkdown
--- finished re-building ‘datasets.Rmd’

--- re-building ‘welcome_to_AMR.Rmd’ using rmarkdown
--- finished re-building ‘welcome_to_AMR.Rmd’

SUMMARY: processing the following files failed:
  ‘AMR.Rmd’ ‘MDR.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.2Mb
  sub-directories of 1Mb or more:
    R      4.2Mb
    data   3.5Mb
Error(s) in re-building vignettes:
--- re-building ‘AMR.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "patient_id"
Quitting from lines 161-162 (AMR.Rmd) 
Error: processing vignette 'AMR.Rmd' failed with diagnostics:
invalid value 0 for 'digits' argument
--- failed re-building ‘AMR.Rmd’

--- re-building ‘MDR.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 99-102 (MDR.Rmd) 
Error: processing vignette 'MDR.Rmd' failed with diagnostics:
invalid value 0 for 'digits' argument
--- failed re-building ‘MDR.Rmd’

--- re-building ‘datasets.Rmd’ using rmarkdown
--- finished re-building ‘datasets.Rmd’

--- re-building ‘welcome_to_AMR.Rmd’ using rmarkdown
--- finished re-building ‘welcome_to_AMR.Rmd’

SUMMARY: processing the following files failed:
  ‘AMR.Rmd’ ‘MDR.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    R      4.2Mb
    data   3.5Mb
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    R      4.4Mb
    data   3.5Mb