Last updated on 2021-05-22 15:49:45 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.6 | 40.05 | 321.65 | 361.70 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.6 | 32.57 | 248.43 | 281.00 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.6 | 428.22 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.6 | 419.05 | OK | |||
| r-devel-windows-x86_64 | 1.0.6 | 48.00 | 353.00 | 401.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.0.6 | OK | ||||
| r-patched-linux-x86_64 | 1.0.6 | 44.49 | 302.17 | 346.66 | OK | |
| r-patched-solaris-x86 | 1.0.6 | 553.10 | WARN | |||
| r-release-linux-x86_64 | 1.0.6 | 38.48 | 304.23 | 342.71 | OK | |
| r-release-windows-ix86+x86_64 | 1.0.6 | 48.00 | 353.00 | 401.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.6 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.6 | 53.00 | 261.00 | 314.00 | OK |
Version: 1.0.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘i-introduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘i-introduction.Rmd’
--- re-building ‘ii-modules.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Attaching package: 'magrittr'
The following object is masked from 'package:raster':
extract
Setting:
options(
spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/tmp/RtmpMhaaRa/working_dir/Rtmp1Ta4YG/raster'
reproducible.cachePath = '/tmp/RtmpMhaaRa/working_dir/Rtmp1Ta4YG/Require/cache'
spades.inputPath = '/tmp/RtmpJNayn5/SpaDES/inputs'
spades.outputPath = '/tmp/RtmpJNayn5/SpaDES/outputs'
spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
)
2021-05-08 01:19:54 INFO:: total elpsd: 0.011 secs | 0 checkpoint init 0
2021-05-08 01:19:54 INFO:: total elpsd: 0.025 secs | 0 save init 0
2021-05-08 01:19:54 INFO:: total elpsd: 0.036 secs | 0 progress init 0
2021-05-08 01:19:54 INFO:: total elpsd: 0.06 secs | 0 load init 0
2021-05-08 01:19:54 INFO:: total elpsd: 0.066 secs | 0 randomLandscapes init
2021-05-08 01:19:55 INFO:: total elpsd: 1.5 secs | 0 fireSpread init 1
2021-05-08 01:19:55 INFO:: total elpsd: 1.5 secs | 0 caribouMovement init 1
2021-05-08 01:19:55 INFO:: total elpsd: 1.6 secs | 0 fireSpread burn 5
2021-05-08 01:19:55 INFO:: total elpsd: 1.8 secs | 0 fireSpread stats 5
2021-05-08 01:19:55 INFO:: total elpsd: 1.8 secs | 0 randomLandscapes plot 1
2021-05-08 01:19:56 INFO:: total elpsd: 2.2 secs | 0 fireSpread plot.init 10
2021-05-08 01:19:56 INFO:: total elpsd: 2.6 secs | 0.08333 caribouMovement p
2021-05-08 01:19:57 INFO:: total elpsd: 3 secs | 0.1667 caribouMovement plot
2021-05-08 01:19:57 INFO:: total elpsd: 3.2 secs | 0.25 caribouMovement plot
2021-05-08 01:19:57 INFO:: total elpsd: 3.4 secs | 0.3333 caribouMovement pl
2021-05-08 01:19:57 INFO:: total elpsd: 3.6 secs | 0.4167 caribouMovement pl
2021-05-08 01:19:58 INFO:: total elpsd: 4 secs | 0.5 caribouMovement plot 10
2021-05-08 01:19:58 INFO:: total elpsd: 4.2 secs | 0.5833 caribouMovement pl
2021-05-08 01:19:58 INFO:: total elpsd: 4.4 secs | 0.6667 caribouMovement pl
2021-05-08 01:19:58 INFO:: total elpsd: 4.7 secs | 0.75 caribouMovement plot
2021-05-08 01:19:59 INFO:: total elpsd: 4.9 secs | 0.8333 caribouMovement pl
2021-05-08 01:19:59 INFO:: total elpsd: 5.1 secs | 0.9167 caribouMovement pl
2021-05-08 01:19:59 INFO:: total elpsd: 5.4 secs | 1 caribouMovement move 5
2021-05-08 01:19:59 INFO:: total elpsd: 5.5 secs | 1 fireSpread burn 5
2021-05-08 01:20:01 INFO:: total elpsd: 7.5 secs | 1 fireSpread stats 5
2021-05-08 01:20:01 INFO:: total elpsd: 7.5 secs | 1 caribouMovement plot 10
2021-05-08 01:20:01 INFO:: total elpsd: 7.7 secs | 1.083 caribouMovement mov
2021-05-08 01:20:01 INFO:: total elpsd: 7.8 secs | 1.083 caribouMovement plo
2021-05-08 01:20:02 INFO:: total elpsd: 8 secs | 1.167 caribouMovement move
2021-05-08 01:20:02 INFO:: total elpsd: 8 secs | 1.167 caribouMovement plot
2021-05-08 01:20:02 INFO:: total elpsd: 8.2 secs | 1.25 caribouMovement move
2021-05-08 01:20:02 INFO:: total elpsd: 8.2 secs | 1.25 caribouMovement plot
2021-05-08 01:20:02 INFO:: total elpsd: 8.4 secs | 1.333 caribouMovement mov
2021-05-08 01:20:02 INFO:: total elpsd: 8.4 secs | 1.333 caribouMovement plo
2021-05-08 01:20:02 INFO:: total elpsd: 8.7 secs | 1.417 caribouMovement mov
2021-05-08 01:20:02 INFO:: total elpsd: 8.7 secs | 1.417 caribouMovement plo
2021-05-08 01:20:03 INFO:: total elpsd: 8.9 secs | 1.5 caribouMovement move
2021-05-08 01:20:03 INFO:: total elpsd: 8.9 secs | 1.5 caribouMovement plot
2021-05-08 01:20:03 INFO:: total elpsd: 9.1 secs | 1.583 caribouMovement mov
2021-05-08 01:20:03 INFO:: total elpsd: 9.2 secs | 1.583 caribouMovement plo
2021-05-08 01:20:03 INFO:: total elpsd: 9.3 secs | 1.667 caribouMovement mov
2021-05-08 01:20:03 INFO:: total elpsd: 9.4 secs | 1.667 caribouMovement plo
2021-05-08 01:20:03 INFO:: total elpsd: 9.6 secs | 1.75 caribouMovement move
2021-05-08 01:20:03 INFO:: total elpsd: 9.6 secs | 1.75 caribouMovement plot
2021-05-08 01:20:03 INFO:: total elpsd: 9.8 secs | 1.833 caribouMovement mov
2021-05-08 01:20:03 INFO:: total elpsd: 9.8 secs | 1.833 caribouMovement plo
2021-05-08 01:20:04 INFO:: total elpsd: 10 secs | 1.917 caribouMovement move
2021-05-08 01:20:04 INFO:: total elpsd: 10 secs | 1.917 caribouMovement plot
2021-05-08 01:20:04 INFO:: total elpsd: 10 secs | 2 fireSpread burn 5
2021-05-08 01:20:04 INFO:: total elpsd: 10 secs | 2 caribouMovement move 5
2021-05-08 01:20:04 INFO:: total elpsd: 10 secs | 2 fireSpread stats 5
2021-05-08 01:20:04 INFO:: total elpsd: 10 secs | 2 caribouMovement plot 10
simList saved in
SpaDES.core:::.pkgEnv$.sim
It will be deleted at next spades() call.
Quitting from lines 389-391 (ii-modules.Rmd)
Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘ii-modules.Rmd’
--- re-building ‘iii-cache.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Attaching package: 'raster'
The following object is masked from 'package:magrittr':
extract
Loading required package: quickPlot
Attaching package: 'SpaDES.core'
The following objects are masked from 'package:stats':
end, start
The following object is masked from 'package:utils':
citation
Setting:
options(
spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/tmp/RtmpMhaaRa/working_dir/RtmpoPaW0M/raster'
reproducible.cachePath = '/tmp/RtmpMhaaRa/working_dir/RtmpoPaW0M/Require/cache'
spades.inputPath = '/tmp/RtmpJNayn5/SpaDES/inputs'
spades.outputPath = '/tmp/RtmpJNayn5/SpaDES/outputs'
spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
)
Loading required package: RColorBrewer
--- finished re-building ‘iii-cache.Rmd’
--- re-building ‘iv-advanced.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘iv-advanced.Rmd’
--- re-building ‘v-automated-testing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘v-automated-testing.Rmd’
SUMMARY: processing the following file failed:
‘ii-modules.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.0.6
Check: dependencies in R code
Result: NOTE
No protocol specified
No protocol specified
Flavor: r-oldrel-macos-x86_64
Version: 1.0.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘i-introduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘i-introduction.Rmd’
--- re-building ‘ii-modules.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'magrittr'
The following object is masked from 'package:raster':
extract
Setting:
options(
spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/private/tmp/RtmpxgQIeu/raster'
reproducible.cachePath = '/private/tmp/RtmpxgQIeu/Require/cache'
spades.inputPath = '/private/tmp/RtmpZJkGmA/SpaDES/inputs'
spades.outputPath = '/private/tmp/RtmpZJkGmA/SpaDES/outputs'
spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
2021-02-21 06:10:51 INFO:: total elpsd: 0.0028 secs | 0 checkpoint init 0
2021-02-21 06:10:51 INFO:: total elpsd: 0.0087 secs | 0 save init 0
2021-02-21 06:10:51 INFO:: total elpsd: 0.012 secs | 0 progress init 0
2021-02-21 06:10:51 INFO:: total elpsd: 0.015 secs | 0 load init 0
2021-02-21 06:10:51 INFO:: total elpsd: 0.018 secs | 0 randomLandscapes init
2021-02-21 06:10:52 INFO:: total elpsd: 0.46 secs | 0 fireSpread init 1
2021-02-21 06:10:52 INFO:: total elpsd: 0.48 secs | 0 caribouMovement init 1
2021-02-21 06:10:52 INFO:: total elpsd: 0.49 secs | 0 fireSpread burn 5
2021-02-21 06:10:52 INFO:: total elpsd: 0.6 secs | 0 fireSpread stats 5
2021-02-21 06:10:52 INFO:: total elpsd: 0.61 secs | 0 randomLandscapes plot
2021-02-21 06:10:52 INFO:: total elpsd: 0.83 secs | 0 fireSpread plot.init 1
2021-02-21 06:10:52 INFO:: total elpsd: 1 secs | 0.08333 caribouMovement plo
2021-02-21 06:10:52 INFO:: total elpsd: 1.1 secs | 0.1667 caribouMovement pl
2021-02-21 06:10:53 INFO:: total elpsd: 1.3 secs | 0.25 caribouMovement plot
2021-02-21 06:10:53 INFO:: total elpsd: 1.4 secs | 0.3333 caribouMovement pl
2021-02-21 06:10:53 INFO:: total elpsd: 1.6 secs | 0.4167 caribouMovement pl
2021-02-21 06:10:53 INFO:: total elpsd: 1.7 secs | 0.5 caribouMovement plot
2021-02-21 06:10:53 INFO:: total elpsd: 1.8 secs | 0.5833 caribouMovement pl
2021-02-21 06:10:53 INFO:: total elpsd: 2 secs | 0.6667 caribouMovement plot
2021-02-21 06:10:53 INFO:: total elpsd: 2.1 secs | 0.75 caribouMovement plot
2021-02-21 06:10:54 INFO:: total elpsd: 2.2 secs | 0.8333 caribouMovement pl
2021-02-21 06:10:54 INFO:: total elpsd: 2.4 secs | 0.9167 caribouMovement pl
2021-02-21 06:10:54 INFO:: total elpsd: 2.5 secs | 1 caribouMovement move 5
2021-02-21 06:10:54 INFO:: total elpsd: 2.6 secs | 1 fireSpread burn 5
2021-02-21 06:10:55 INFO:: total elpsd: 3.4 secs | 1 fireSpread stats 5
2021-02-21 06:10:55 INFO:: total elpsd: 3.4 secs | 1 caribouMovement plot 10
2021-02-21 06:10:55 INFO:: total elpsd: 3.5 secs | 1.083 caribouMovement mov
2021-02-21 06:10:55 INFO:: total elpsd: 3.6 secs | 1.083 caribouMovement plo
2021-02-21 06:10:55 INFO:: total elpsd: 3.7 secs | 1.167 caribouMovement mov
2021-02-21 06:10:55 INFO:: total elpsd: 3.7 secs | 1.167 caribouMovement plo
2021-02-21 06:10:55 INFO:: total elpsd: 3.9 secs | 1.25 caribouMovement move
2021-02-21 06:10:55 INFO:: total elpsd: 3.9 secs | 1.25 caribouMovement plot
2021-02-21 06:10:55 INFO:: total elpsd: 4 secs | 1.333 caribouMovement move
2021-02-21 06:10:55 INFO:: total elpsd: 4 secs | 1.333 caribouMovement plot
2021-02-21 06:10:56 INFO:: total elpsd: 4.2 secs | 1.417 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 4.2 secs | 1.417 caribouMovement plo
2021-02-21 06:10:56 INFO:: total elpsd: 4.3 secs | 1.5 caribouMovement move
2021-02-21 06:10:56 INFO:: total elpsd: 4.3 secs | 1.5 caribouMovement plot
2021-02-21 06:10:56 INFO:: total elpsd: 4.5 secs | 1.583 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 4.5 secs | 1.583 caribouMovement plo
2021-02-21 06:10:56 INFO:: total elpsd: 4.6 secs | 1.667 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 4.6 secs | 1.667 caribouMovement plo
2021-02-21 06:10:56 INFO:: total elpsd: 4.8 secs | 1.75 caribouMovement move
2021-02-21 06:10:56 INFO:: total elpsd: 4.8 secs | 1.75 caribouMovement plot
2021-02-21 06:10:56 INFO:: total elpsd: 4.9 secs | 1.833 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 4.9 secs | 1.833 caribouMovement plo
2021-02-21 06:10:56 INFO:: total elpsd: 5.1 secs | 1.917 caribouMovement mov
2021-02-21 06:10:56 INFO:: total elpsd: 5.1 secs | 1.917 caribouMovement plo
2021-02-21 06:10:57 INFO:: total elpsd: 5.2 secs | 2 fireSpread burn 5
2021-02-21 06:10:57 INFO:: total elpsd: 5.3 secs | 2 caribouMovement move 5
2021-02-21 06:10:57 INFO:: total elpsd: 5.3 secs | 2 fireSpread stats 5
2021-02-21 06:10:57 INFO:: total elpsd: 5.3 secs | 2 caribouMovement plot 10
simList saved in
SpaDES.core:::.pkgEnv$.sim
It will be deleted at next spades() call.
Quitting from lines 389-391 (ii-modules.Rmd)
Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘ii-modules.Rmd’
--- re-building ‘iii-cache.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'raster'
The following object is masked from 'package:magrittr':
extract
Loading required package: quickPlot
Attaching package: 'SpaDES.core'
The following objects are masked from 'package:stats':
end, start
The following object is masked from 'package:utils':
citation
Setting:
options(
spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
Paths set to:
options(
rasterTmpDir = '/private/tmp/RtmpT9WZrK/raster'
reproducible.cachePath = '/private/tmp/RtmpT9WZrK/Require/cache'
spades.inputPath = '/private/tmp/RtmpZJkGmA/SpaDES/inputs'
spades.outputPath = '/private/tmp/RtmpZJkGmA/SpaDES/outputs'
spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
)
Loading required package: RColorBrewer
--- finished re-building ‘iii-cache.Rmd’
--- re-building ‘iv-advanced.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘iv-advanced.Rmd’
--- re-building ‘v-automated-testing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘v-automated-testing.Rmd’
SUMMARY: processing the following file failed:
‘ii-modules.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64