Last updated on 2021-05-27 12:54:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.9.6 | 48.33 | 532.20 | 580.53 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.9.6 | 40.76 | 385.23 | 425.99 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.9.6 | 709.08 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.9.6 | 720.51 | ERROR | |||
| r-devel-windows-x86_64 | 1.9.6 | 72.00 | 696.00 | 768.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.9.6 | OK | ||||
| r-patched-linux-x86_64 | 1.9.6 | 54.11 | 524.86 | 578.97 | OK | |
| r-release-linux-x86_64 | 1.9.6 | 44.29 | 519.77 | 564.06 | OK | |
| r-release-macos-x86_64 | 1.9.6 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.9.6 | 80.00 | 489.00 | 569.00 | OK | |
| r-oldrel-macos-x86_64 | 1.9.6 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.9.6 | 62.00 | 502.00 | 564.00 | OK |
Version: 1.9.6
Check: examples
Result: ERROR
Running examples in 'dartR-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gl.report.hwe
> ### Title: Reports departure from Hardy-Weinberg Equilibrium
> ### Aliases: gl.report.hwe
>
> ### ** Examples
>
> list <- gl.report.hwe(testset.gl,subset=c("EmmacMaclGeor", "EmmacCoopCully"),plot=TRUE,bonf=FALSE)
Starting gl.report.hwe
Processing a SNP dataset
Pooling populations EmmacMaclGeor EmmacCoopCully for HWE calculations
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Error in matrix(c(1, 1), 1, 1, byrow = FALSE) :
data length differs from size of matrix: [2 != 1 x 1]
Calls: gl.report.hwe -> <Anonymous> -> matrix
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.9.6
Check: examples
Result: ERROR
Running examples in ‘dartR-Ex.R’ failed
The error most likely occurred in:
> ### Name: gl.report.hwe
> ### Title: Reports departure from Hardy-Weinberg Equilibrium
> ### Aliases: gl.report.hwe
>
> ### ** Examples
>
> list <- gl.report.hwe(testset.gl,subset=c("EmmacMaclGeor", "EmmacCoopCully"),plot=TRUE,bonf=FALSE)
Starting gl.report.hwe
Processing a SNP dataset
Pooling populations EmmacMaclGeor EmmacCoopCully for HWE calculations
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Warning in HWChisq(Xr[i, ], cc = 0.5, verbose = FALSE) :
Expected counts below 5: chi-square approximation may be incorrect
Error in matrix(c(1, 1), 1, 1, byrow = FALSE) :
data length differs from size of matrix: [2 != 1 x 1]
Calls: gl.report.hwe -> <Anonymous> -> matrix
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc