Last updated on 2021-05-27 12:54:15 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3 | 11.20 | 101.78 | 112.98 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3 | 9.00 | 75.40 | 84.40 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3 | 149.06 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3 | 136.73 | ERROR | |||
| r-devel-windows-x86_64 | 1.3 | 18.00 | 197.00 | 215.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.3 | OK | ||||
| r-patched-linux-x86_64 | 1.3 | 10.84 | 153.84 | 164.68 | OK | |
| r-patched-solaris-x86 | 1.3 | 295.40 | OK | |||
| r-release-linux-x86_64 | 1.3 | 9.59 | 154.35 | 163.94 | OK | |
| r-release-macos-x86_64 | 1.3 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.3 | 19.00 | 169.00 | 188.00 | OK | |
| r-oldrel-macos-x86_64 | 1.3 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3 | 19.00 | 144.00 | 163.00 | OK |
Version: 1.3
Check: examples
Result: ERROR
Running examples in 'jackstraw-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lfa.corpcor
> ### Title: Logistic Factor Analysis without C++ Dependency
> ### Aliases: lfa.corpcor
>
> ### ** Examples
>
> set.seed(1234)
> ## simulate genotype data from a logistic factor model
> m=5000; n=100; pi0=.9
> m0 = round(m*pi0)
> m1 = m-round(m*pi0)
> B = matrix(0, nrow=m, ncol=1)
> B[1:m1,] = matrix(runif(m1*n, min=-.5, max=.5), nrow=m1, ncol=1)
Error in matrix(runif(m1 * n, min = -0.5, max = 0.5), nrow = m1, ncol = 1) :
data length differs from size of matrix: [50000 != 500 x 1]
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'jackstraw.Rnw' using knitr
Warning: code chunks must not depend on the uncached chunk "sim_pca_data"
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_data'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_PA'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_1pc'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_jackstraw'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_pvalues'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_lfa_data'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Quitting from lines 123-142 (jackstraw.Rnw)
Error: processing vignette 'jackstraw.Rnw' failed with diagnostics:
data length differs from size of matrix: [250000 != 2500 x 1]
--- failed re-building 'jackstraw.Rnw'
SUMMARY: processing the following file failed:
'jackstraw.Rnw'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.3
Check: examples
Result: ERROR
Running examples in ‘jackstraw-Ex.R’ failed
The error most likely occurred in:
> ### Name: lfa.corpcor
> ### Title: Logistic Factor Analysis without C++ Dependency
> ### Aliases: lfa.corpcor
>
> ### ** Examples
>
> set.seed(1234)
> ## simulate genotype data from a logistic factor model
> m=5000; n=100; pi0=.9
> m0 = round(m*pi0)
> m1 = m-round(m*pi0)
> B = matrix(0, nrow=m, ncol=1)
> B[1:m1,] = matrix(runif(m1*n, min=-.5, max=.5), nrow=m1, ncol=1)
Error in matrix(runif(m1 * n, min = -0.5, max = 0.5), nrow = m1, ncol = 1) :
data length differs from size of matrix: [50000 != 500 x 1]
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘jackstraw.Rnw’ using knitr
Warning: code chunks must not depend on the uncached chunk "sim_pca_data"
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_data'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_PA'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_1pc'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_jackstraw'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_pca_pvalues'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'sim_lfa_data'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Quitting from lines 123-142 (jackstraw.Rnw)
Error: processing vignette 'jackstraw.Rnw' failed with diagnostics:
data length differs from size of matrix: [250000 != 2500 x 1]
--- failed re-building ‘jackstraw.Rnw’
SUMMARY: processing the following file failed:
‘jackstraw.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘jackstraw.Rnw’ using knitr
Warning: code chunks must not depend on the uncached chunk "sim_pca_data"
Quitting from lines 123-142 (jackstraw.Rnw)
Error: processing vignette 'jackstraw.Rnw' failed with diagnostics:
data length differs from size of matrix: [250000 != 2500 x 1]
--- failed re-building ‘jackstraw.Rnw’
SUMMARY: processing the following file failed:
‘jackstraw.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘lfa’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-x86_64