Last updated on 2021-06-04 06:48:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.6 | 5.66 | 80.38 | 86.04 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 0.1.6 | 4.08 | 59.37 | 63.45 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 0.1.6 | 106.84 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.6 | 98.04 | WARN | |||
| r-devel-windows-x86_64 | 0.1.6 | 8.00 | 74.00 | 82.00 | WARN | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.1.6 | WARN | ||||
| r-patched-linux-x86_64 | 0.1.6 | 4.43 | 75.78 | 80.21 | WARN | |
| r-patched-solaris-x86 | 0.1.6 | 82.50 | ERROR | |||
| r-release-linux-x86_64 | 0.1.6 | 4.33 | 75.39 | 79.72 | WARN | |
| r-release-macos-arm64 | 0.1.6 | WARN | ||||
| r-release-macos-x86_64 | 0.1.6 | WARN | ||||
| r-release-windows-ix86+x86_64 | 0.1.6 | 7.00 | 77.00 | 84.00 | WARN | |
| r-oldrel-macos-x86_64 | 0.1.6 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.6 | 10.00 | 103.00 | 113.00 | WARN |
Version: 0.1.6
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64
Version: 0.1.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'Extending-cooccurNet.Rmd' using rmarkdown
Quitting from lines 326-327 (Extending-cooccurNet.Rmd)
Error: processing vignette 'Extending-cooccurNet.Rmd' failed with diagnostics:
'cBind' is defunct.
Since R version 3.2.0, base's cbind() should work fine with S4 objects
--- failed re-building 'Extending-cooccurNet.Rmd'
SUMMARY: processing the following file failed:
'Extending-cooccurNet.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.6
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'cooccurNetwork' 'memory.limits'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.6
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘knitr’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.1.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘Extending-cooccurNet.Rmd’ using rmarkdown
Quitting from lines 326-327 (Extending-cooccurNet.Rmd)
Error: processing vignette 'Extending-cooccurNet.Rmd' failed with diagnostics:
'cBind' is defunct.
Since R version 3.2.0, base's cbind() should work fine with S4 objects
--- failed re-building ‘Extending-cooccurNet.Rmd’
SUMMARY: processing the following file failed:
‘Extending-cooccurNet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.6
Check: examples
Result: ERROR
Running examples in ‘cooccurNet-Ex.R’ failed
The error most likely occurred in:
> ### Name: coocnet
> ### Title: coocnet
> ### Aliases: coocnet
>
> ### ** Examples
>
> cooccurNetwork = coocnet(dataFile=getexample(dataType="protein"), dataType="protein")
reading file......
completed. (10,329)
preprocess file......Error in if (pred >= memsize * alpha || ncol > 150 || (nrow > 30000 & :
missing value where TRUE/FALSE needed
Calls: coocnet ... cooccur.dataprepreprocess.preprocess -> inmemoryflag
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘Extending-cooccurNet.Rmd’ using rmarkdown
Quitting from lines 176-178 (Extending-cooccurNet.Rmd)
Error: processing vignette 'Extending-cooccurNet.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘Extending-cooccurNet.Rmd’
SUMMARY: processing the following file failed:
‘Extending-cooccurNet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.6
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘memory.limits’
Flavor: r-patched-solaris-x86
Version: 0.1.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘Extending-cooccurNet.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 326-327 (Extending-cooccurNet.Rmd)
Error: processing vignette 'Extending-cooccurNet.Rmd' failed with diagnostics:
'cBind' is defunct.
Since R version 3.2.0, base's cbind() should work fine with S4 objects
--- failed re-building ‘Extending-cooccurNet.Rmd’
SUMMARY: processing the following file failed:
‘Extending-cooccurNet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64