Last updated on 2021-06-14 15:50:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1 | 14.32 | 70.79 | 85.11 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1 | 11.83 | 55.90 | 67.73 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1 | 111.38 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1 | 96.46 | NOTE | |||
| r-devel-windows-x86_64 | 0.1 | 20.00 | 85.00 | 105.00 | NOTE | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.1 | NOTE | ||||
| r-patched-linux-x86_64 | 0.1 | 12.55 | 65.87 | 78.42 | OK | |
| r-patched-solaris-x86 | 0.1 | 173.20 | NOTE | |||
| r-release-linux-x86_64 | 0.1 | 13.31 | 64.48 | 77.79 | OK | |
| r-release-macos-arm64 | 0.1 | ERROR | ||||
| r-release-macos-x86_64 | 0.1 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.1 | 24.00 | 119.00 | 143.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1 | 20.00 | 115.00 | 135.00 | NOTE |
Version: 0.1
Check: installed package size
Result: NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 5.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘Rcpp’ ‘Rdpack’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.1
Check: examples
Result: ERROR
Running examples in ‘hhsmm-Ex.R’ failed
The error most likely occurred in:
> ### Name: make_model
> ### Title: make a hhsmmspec model
> ### Aliases: make_model
>
> ### ** Examples
>
> J <- 3
> initial <- c(1,0,0)
> semi <- c(FALSE,TRUE,FALSE)
> P <- matrix(c(0.8, 0.1, 0.1, 0.5, 0, 0.5, 0.1, 0.2, 0.7), nrow = J, byrow=TRUE)
> par <- list(mu = list(list(7,8),list(10,9,11),list(12,14)),
+ sigma = list(list(3.8,4.9),list(4.3,4.2,5.4),list(4.5,6.1)),
+ mix.p = list(c(0.3,0.7),c(0.2,0.3,0.5),c(0.5,0.5)))
> sojourn <- list(shape = c(0,3,0), scale = c(0,10,0), type = "gamma")
> model <- hhsmmspec(init = initial, transition = P, parms.emis = par,
+ dens.emis = dmixmvnorm, sojourn = sojourn, semi = semi)
> train <- simulate(model, nsim = c(10,8,8,18), seed = 1234, remission = rmixmvnorm)
> clus = initial_cluster(train,nstate=3,nmix=c(2,2,2),ltr=FALSE,
+ final.absorb=FALSE,verbose=TRUE)
Within sequence clustering ...
State 1
Between sequence clustering ...
State 2
Between sequence clustering ...
State 3
Between sequence clustering ...
> par = initial_estimate(clus,verbose=TRUE)
Intitial estimation ....
State 1 estimation
[.. ] 25%
[..... ] 50%
[....... ] 75%
[..........] 100%
Mixture component 1 estimation
Mixture component 2 estimation
State 2 estimation
[.. ] 25%
[..... ] 50%
[....... ] 75%
[..........] 100%
Mixture component 1 estimation
Mixture component 2 estimation
State 3 estimation
[.. ] 25%
[..... ] 50%
[....... ] 75%
[..........] 100%
Mixture component 1 estimation
Mixture component 2 estimation
> model = make_model(par,semi=NULL,M=max(train$N),sojourn="auto")
Warning in chisq.test(x = observed, p = expected.gamma) :
Chi-squared approximation may be incorrect
Warning in chisq.test(x = observed, p = expected.lnorm) :
Chi-squared approximation may be incorrect
Warning in chisq.test(x = observed, p = expected.poisson) :
Chi-squared approximation may be incorrect
Warning in chisq.test(x = observed, p = expected.weibull) :
Chi-squared approximation may be incorrect
Warning in chisq.test(x = observed, p = expected.nbinom) :
Chi-squared approximation may be incorrect
Warning in chisq.test(x = observed, p = expected.log) :
Chi-squared approximation may be incorrect
Warning in min(which(d0jc >= 0.1 * t)) :
no non-missing arguments to min; returning Inf
Error in breaks[l]:(breaks[l + 1] - 1) :
result would be too long a vector
Calls: make_model
Execution halted
Flavor: r-release-macos-arm64