Last updated on 2021-06-30 07:50:05 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.6.3 | 9.17 | 139.57 | 148.74 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.6.3 | 6.37 | 102.82 | 109.19 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.6.3 | 178.78 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.6.3 | 170.27 | ERROR | |||
| r-devel-windows-x86_64 | 1.6.3 | 15.00 | 156.00 | 171.00 | ERROR | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.6.3 | ERROR | ||||
| r-patched-linux-x86_64 | 1.6.3 | 9.98 | 128.22 | 138.20 | ERROR | |
| r-patched-solaris-x86 | 1.6.3 | 240.90 | ERROR | |||
| r-release-linux-x86_64 | 1.6.3 | 7.59 | 128.06 | 135.65 | ERROR | |
| r-release-macos-arm64 | 1.6.3 | OK | ||||
| r-release-macos-x86_64 | 1.6.3 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.6.3 | 20.00 | 152.00 | 172.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.6.3 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.6.3 | 21.00 | 167.00 | 188.00 | ERROR |
Version: 1.6.3
Check: examples
Result: ERROR
Running examples in 'ggseg-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geom_brain
> ### Title: Brain geom
> ### Aliases: geom_brain GeomBrain
> ### Keywords: datasets
>
> ### ** Examples
>
> library(ggplot2)
>
> ggplot() +
+ geom_brain(atlas = dk)
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
x
1. +-(function (x, ...) ...
2. \-ggplot2:::print.ggplot(x)
3. +-ggplot2::ggplot_build(x)
4. \-ggplot2:::ggplot_build.ggplot(x)
5. \-ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
6. \-ggplot2:::f(l = layers[[i]], d = data[[i]])
7. \-l$compute_statistic(d, layout)
8. \-ggplot2:::f(..., self = self)
9. \-self$stat$compute_layer(data, self$computed_stat_params, layout)
10. \-ggplot2:::f(..., self = self)
11. \-ggproto_parent(Stat, self)$compute_layer(data, params, layout)
12. \-ggplot2:::f(..., self = self)
13. \-ggplot2:::check_required_aesthetics(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.6.3
Check: tests
Result: ERROR
Running 'spelling.R' [0s/1s]
Running 'testthat.R' [36s/43s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
== Skipped tests ===============================================================
* On CRAN (6)
* empty test (1)
== Failed tests ================================================================
-- Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ----------------
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
x
1. \-vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. \-vdiffr:::writer(fig, testcase, title)
3. +-vdiffr:::print_plot(plot, title)
4. \-vdiffr:::print_plot.ggplot(plot, title)
5. +-base::print(p)
6. \-ggplot2:::print.ggplot(p)
7. +-ggplot2::ggplot_build(x)
8. \-ggplot2:::ggplot_build.ggplot(x)
9. \-ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. \-ggplot2:::f(l = layers[[i]], d = data[[i]])
11. \-l$compute_statistic(d, layout)
12. \-ggplot2:::f(..., self = self)
13. \-self$stat$compute_layer(data, self$computed_stat_params, layout)
14. \-ggplot2:::f(..., self = self)
15. \-ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. \-ggplot2:::f(..., self = self)
17. \-ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.6.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'externalData.Rmd' using rmarkdown
--- finished re-building 'externalData.Rmd'
--- re-building 'freesurfer_files.Rmd' using rmarkdown
--- finished re-building 'freesurfer_files.Rmd'
--- re-building 'geom-sf.Rmd' using rmarkdown
Quitting from lines 45-46 (geom-sf.Rmd)
Error: processing vignette 'geom-sf.Rmd' failed with diagnostics:
stat_sf requires the following missing aesthetics: geometry
--- failed re-building 'geom-sf.Rmd'
--- re-building 'ggseg.Rmd' using rmarkdown
Quitting from lines 54-55 (ggseg.Rmd)
Error: processing vignette 'ggseg.Rmd' failed with diagnostics:
stat_sf requires the following missing aesthetics: geometry
--- failed re-building 'ggseg.Rmd'
SUMMARY: processing the following files failed:
'geom-sf.Rmd' 'ggseg.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.6.3
Check: examples
Result: ERROR
Running examples in ‘ggseg-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geom_brain
> ### Title: Brain geom
> ### Aliases: geom_brain GeomBrain
> ### Keywords: datasets
>
> ### ** Examples
>
> library(ggplot2)
>
> ggplot() +
+ geom_brain(atlas = dk)
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
█
1. ├─(function (x, ...) ...
2. └─ggplot2:::print.ggplot(x)
3. ├─ggplot2::ggplot_build(x)
4. └─ggplot2:::ggplot_build.ggplot(x)
5. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
6. └─ggplot2:::f(l = layers[[i]], d = data[[i]])
7. └─l$compute_statistic(d, layout)
8. └─ggplot2:::f(..., self = self)
9. └─self$stat$compute_layer(data, self$computed_stat_params, layout)
10. └─ggplot2:::f(..., self = self)
11. └─ggproto_parent(Stat, self)$compute_layer(data, params, layout)
12. └─ggplot2:::f(..., self = self)
13. └─ggplot2:::check_required_aesthetics(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.6.3
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/1s]
Running ‘testthat.R’ [26s/38s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (6)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ────────────────
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
█
1. └─vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. └─vdiffr:::writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.ggplot(plot, title)
5. ├─base::print(p)
6. └─ggplot2:::print.ggplot(p)
7. ├─ggplot2::ggplot_build(x)
8. └─ggplot2:::ggplot_build.ggplot(x)
9. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. └─ggplot2:::f(l = layers[[i]], d = data[[i]])
11. └─l$compute_statistic(d, layout)
12. └─ggplot2:::f(..., self = self)
13. └─self$stat$compute_layer(data, self$computed_stat_params, layout)
14. └─ggplot2:::f(..., self = self)
15. └─ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. └─ggplot2:::f(..., self = self)
17. └─ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.6.3
Check: examples
Result: ERROR
Running examples in ‘ggseg-Ex.R’ failed
The error most likely occurred in:
> ### Name: geom_brain
> ### Title: Brain geom
> ### Aliases: geom_brain GeomBrain
> ### Keywords: datasets
>
> ### ** Examples
>
> library(ggplot2)
>
> ggplot() +
+ geom_brain(atlas = dk)
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
█
1. ├─(function (x, ...) ...
2. └─ggplot2:::print.ggplot(x)
3. ├─ggplot2::ggplot_build(x)
4. └─ggplot2:::ggplot_build.ggplot(x)
5. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
6. └─ggplot2:::f(l = layers[[i]], d = data[[i]])
7. └─l$compute_statistic(d, layout)
8. └─ggplot2:::f(..., self = self)
9. └─self$stat$compute_layer(data, self$computed_stat_params, layout)
10. └─ggplot2:::f(..., self = self)
11. └─ggproto_parent(Stat, self)$compute_layer(data, params, layout)
12. └─ggplot2:::f(..., self = self)
13. └─ggplot2:::check_required_aesthetics(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86
Version: 1.6.3
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [37s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (6)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ────────────────
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
█
1. └─vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. └─vdiffr:::writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.ggplot(plot, title)
5. ├─base::print(p)
6. └─ggplot2:::print.ggplot(p)
7. ├─ggplot2::ggplot_build(x)
8. └─ggplot2:::ggplot_build.ggplot(x)
9. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. └─ggplot2:::f(l = layers[[i]], d = data[[i]])
11. └─l$compute_statistic(d, layout)
12. └─ggplot2:::f(..., self = self)
13. └─self$stat$compute_layer(data, self$computed_stat_params, layout)
14. └─ggplot2:::f(..., self = self)
15. └─ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. └─ggplot2:::f(..., self = self)
17. └─ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.6.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘externalData.Rmd’ using rmarkdown
--- finished re-building ‘externalData.Rmd’
--- re-building ‘freesurfer_files.Rmd’ using rmarkdown
--- finished re-building ‘freesurfer_files.Rmd’
--- re-building ‘geom-sf.Rmd’ using rmarkdown
Quitting from lines 45-46 (geom-sf.Rmd)
Error: processing vignette 'geom-sf.Rmd' failed with diagnostics:
stat_sf requires the following missing aesthetics: geometry
--- failed re-building ‘geom-sf.Rmd’
--- re-building ‘ggseg.Rmd’ using rmarkdown
Quitting from lines 54-55 (ggseg.Rmd)
Error: processing vignette 'ggseg.Rmd' failed with diagnostics:
stat_sf requires the following missing aesthetics: geometry
--- failed re-building ‘ggseg.Rmd’
SUMMARY: processing the following files failed:
‘geom-sf.Rmd’ ‘ggseg.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.6.3
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [40s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (6)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ────────────────
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
█
1. └─vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. └─vdiffr:::writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.ggplot(plot, title)
5. ├─base::print(p)
6. └─ggplot2:::print.ggplot(p)
7. ├─ggplot2::ggplot_build(x)
8. └─ggplot2:::ggplot_build.ggplot(x)
9. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. └─ggplot2:::f(l = layers[[i]], d = data[[i]])
11. └─l$compute_statistic(d, layout)
12. └─ggplot2:::f(..., self = self)
13. └─self$stat$compute_layer(data, self$computed_stat_params, layout)
14. └─ggplot2:::f(..., self = self)
15. └─ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. └─ggplot2:::f(..., self = self)
17. └─ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.6.3
Check: examples
Result: ERROR
Running examples in 'ggseg-Ex.R' failed
The error most likely occurred in:
> ### Name: geom_brain
> ### Title: Brain geom
> ### Aliases: geom_brain GeomBrain
> ### Keywords: datasets
>
> ### ** Examples
>
> library(ggplot2)
>
> ggplot() +
+ geom_brain(atlas = dk)
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
x
1. +-(function (x, ...) ...
2. \-ggplot2:::print.ggplot(x)
3. +-ggplot2::ggplot_build(x)
4. \-ggplot2:::ggplot_build.ggplot(x)
5. \-ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
6. \-ggplot2:::f(l = layers[[i]], d = data[[i]])
7. \-l$compute_statistic(d, layout)
8. \-ggplot2:::f(..., self = self)
9. \-self$stat$compute_layer(data, self$computed_stat_params, layout)
10. \-ggplot2:::f(..., self = self)
11. \-ggproto_parent(Stat, self)$compute_layer(data, params, layout)
12. \-ggplot2:::f(..., self = self)
13. \-ggplot2:::check_required_aesthetics(...)
Execution halted
Flavors: r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.6.3
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [35s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
== Skipped tests ===============================================================
* On CRAN (6)
* empty test (1)
== Failed tests ================================================================
-- Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ----------------
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
x
1. \-vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. \-vdiffr:::writer(fig, testcase, title)
3. +-vdiffr:::print_plot(plot, title)
4. \-vdiffr:::print_plot.ggplot(plot, title)
5. +-base::print(p)
6. \-ggplot2:::print.ggplot(p)
7. +-ggplot2::ggplot_build(x)
8. \-ggplot2:::ggplot_build.ggplot(x)
9. \-ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. \-ggplot2:::f(l = layers[[i]], d = data[[i]])
11. \-l$compute_statistic(d, layout)
12. \-ggplot2:::f(..., self = self)
13. \-self$stat$compute_layer(data, self$computed_stat_params, layout)
14. \-ggplot2:::f(..., self = self)
15. \-ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. \-ggplot2:::f(..., self = self)
17. \-ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.6.3
Check: tests
Result: ERROR
Running 'spelling.R'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
7. +-ggplot2::ggplot_build(x)
8. \-ggplot2:::ggplot_build.ggplot(x)
9. \-ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. \-ggplot2:::f(l = layers[[i]], d = data[[i]])
11. \-l$compute_statistic(d, layout)
12. \-ggplot2:::f(..., self = self)
13. \-self$stat$compute_layer(data, self$computed_stat_params, layout)
14. \-ggplot2:::f(..., self = self)
15. \-ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. \-ggplot2:::f(..., self = self)
17. \-ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 1.6.3
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [32s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (6)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ────────────────
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
█
1. └─vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. └─vdiffr:::writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.ggplot(plot, title)
5. ├─base::print(p)
6. └─ggplot2:::print.ggplot(p)
7. ├─ggplot2::ggplot_build(x)
8. └─ggplot2:::ggplot_build.ggplot(x)
9. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. └─ggplot2:::f(l = layers[[i]], d = data[[i]])
11. └─l$compute_statistic(d, layout)
12. └─ggplot2:::f(..., self = self)
13. └─self$stat$compute_layer(data, self$computed_stat_params, layout)
14. └─ggplot2:::f(..., self = self)
15. └─ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. └─ggplot2:::f(..., self = self)
17. └─ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.6.3
Check: installed package size
Result: NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
doc 2.3Mb
Flavor: r-patched-solaris-x86
Version: 1.6.3
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [45s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (6)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ────────────────
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
█
1. └─vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. └─vdiffr:::writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.ggplot(plot, title)
5. ├─base::print(p)
6. └─ggplot2:::print.ggplot(p)
7. ├─ggplot2::ggplot_build(x)
8. └─ggplot2:::ggplot_build.ggplot(x)
9. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. └─ggplot2:::f(l = layers[[i]], d = data[[i]])
11. └─l$compute_statistic(d, layout)
12. └─ggplot2:::f(..., self = self)
13. └─self$stat$compute_layer(data, self$computed_stat_params, layout)
14. └─ggplot2:::f(..., self = self)
15. └─ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. └─ggplot2:::f(..., self = self)
17. └─ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.6.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘externalData.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘externalData.Rmd’
--- re-building ‘freesurfer_files.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘freesurfer_files.Rmd’
--- re-building ‘geom-sf.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 45-46 (geom-sf.Rmd)
Error: processing vignette 'geom-sf.Rmd' failed with diagnostics:
stat_sf requires the following missing aesthetics: geometry
--- failed re-building ‘geom-sf.Rmd’
--- re-building ‘ggseg.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 54-55 (ggseg.Rmd)
Error: processing vignette 'ggseg.Rmd' failed with diagnostics:
stat_sf requires the following missing aesthetics: geometry
--- failed re-building ‘ggseg.Rmd’
SUMMARY: processing the following files failed:
‘geom-sf.Rmd’ ‘ggseg.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.6.3
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/1s]
Running ‘testthat.R’ [32s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (6)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ────────────────
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
█
1. └─vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. └─vdiffr:::writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.ggplot(plot, title)
5. ├─base::print(p)
6. └─ggplot2:::print.ggplot(p)
7. ├─ggplot2::ggplot_build(x)
8. └─ggplot2:::ggplot_build.ggplot(x)
9. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. └─ggplot2:::f(l = layers[[i]], d = data[[i]])
11. └─l$compute_statistic(d, layout)
12. └─ggplot2:::f(..., self = self)
13. └─self$stat$compute_layer(data, self$computed_stat_params, layout)
14. └─ggplot2:::f(..., self = self)
15. └─ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. └─ggplot2:::f(..., self = self)
17. └─ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.6.3
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [37s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
== Skipped tests ===============================================================
* On CRAN (6)
* empty test (1)
== Failed tests ================================================================
-- Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ----------------
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
x
1. \-vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. \-vdiffr:::writer(fig, testcase, title)
3. +-vdiffr:::print_plot(plot, title)
4. \-vdiffr:::print_plot.ggplot(plot, title)
5. +-base::print(p)
6. \-ggplot2:::print.ggplot(p)
7. +-ggplot2::ggplot_build(x)
8. \-ggplot2:::ggplot_build.ggplot(x)
9. \-ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. \-ggplot2:::f(l = layers[[i]], d = data[[i]])
11. \-l$compute_statistic(d, layout)
12. \-ggplot2:::f(..., self = self)
13. \-self$stat$compute_layer(data, self$computed_stat_params, layout)
14. \-ggplot2:::f(..., self = self)
15. \-ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. \-ggplot2:::f(..., self = self)
17. \-ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 1.6.3
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [40s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> test_check("ggseg")
Loading required package: ggseg
merging atlas and data by 'region'
== Skipped tests ===============================================================
* The R graphics engine is too old.
Please update to R 4.1.0 and regenerate the vdiffr snapshots. (6)
* empty test (1)
== Failed tests ================================================================
-- Error (test-brain-atlas-plots.R:3:3): brain atlas plots work ----------------
Error: stat_sf requires the following missing aesthetics: geometry
Backtrace:
x
1. \-vdiffr::expect_doppelganger("brain atlas dk plot", plot(dk)) test-brain-atlas-plots.R:3:2
2. \-vdiffr:::writer(fig, testcase, title)
3. +-vdiffr:::print_plot(plot, title)
4. \-vdiffr:::print_plot.ggplot(plot, title)
5. +-base::print(p)
6. \-ggplot2:::print.ggplot(p)
7. +-ggplot2::ggplot_build(x)
8. \-ggplot2:::ggplot_build.ggplot(x)
9. \-ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
10. \-ggplot2:::f(l = layers[[i]], d = data[[i]])
11. \-l$compute_statistic(d, layout)
12. \-ggplot2:::f(..., self = self)
13. \-self$stat$compute_layer(data, self$computed_stat_params, layout)
14. \-ggplot2:::f(..., self = self)
15. \-ggproto_parent(Stat, self)$compute_layer(data, params, layout)
16. \-ggplot2:::f(..., self = self)
17. \-ggplot2:::check_required_aesthetics(...)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 108 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64