Last updated on 2021-08-01 09:50:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 459.82 | 187.75 | 647.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 317.19 | 136.50 | 453.69 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 907.19 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 842.00 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 499.00 | 279.00 | 778.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.0.0 | OK | ||||
| r-patched-linux-x86_64 | 1.0.0 | OK | ||||
| r-patched-solaris-x86 | 1.0.0 | 689.70 | ERROR | |||
| r-release-linux-x86_64 | 1.0.0 | 360.44 | 183.42 | 543.86 | OK | |
| r-release-macos-arm64 | 1.0.0 | NOTE | ||||
| r-release-macos-x86_64 | 1.0.0 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.0.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.0 | 797.00 | 328.00 | 1125.00 | ERROR |
ATLAS clang-ASAN clang-UBSAN gcc-ASAN gcc-UBSAN MKL OpenBLAS valgrind
Version: 1.0.0
Check: installed package size
Result: NOTE
installed size is 36.1Mb
sub-directories of 1Mb or more:
libs 34.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [195s/240s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> testthat::test_that("on attach messages", {
+ expect_message(library(magi))
+ })
Test passed 🌈
>
> test_check("magi")
t = 1; acceptance rate = 0; log-posterior value = 96.5295; theta = 0.2000 0.2000 3.0000
t = 101; acceptance rate = 0.68; log-posterior value = -111.076; theta = 0.1958 0.2256 2.9741
t = 1; acceptance rate = 0; log-posterior value = 96.5295; theta = 0.2000 0.2000 3.0000
t = 101; acceptance rate = 0.82; log-posterior value = -96.1765; theta = 0.2014 0.2393 2.9890
phi =
2.2396 0.6578
1.6332 2.9407
thetaInit =
0.2429
0.2159
2.6842
t = 1; acceptance rate = 0.5; log-posterior value = -5088.82; theta = 0.0914 0.5230 2.2903
phi =
2.2400 0.6500
1.6400 2.9300
thetaInit =
0.2431
0.2157
2.6789
t = 1; acceptance rate = 0.5; log-posterior value = -6268.13; theta = 0.0902 0.5183 2.2269
phi =
2.2396 0.6578
1.6332 2.9407
thetaInit =
0.2429
0.2159
2.6842
t = 1; acceptance rate = 0.5; log-posterior value = -5526.1; theta = 0.1196 0.4699 2.1851
t = 1; acceptance rate = 0; log-posterior value = 7.50032; theta = 0.1510 0.8508 2.2131
t = 1; acceptance rate = 0; log-posterior value = 7.14994; theta = 0.1462 0.8735 2.1585
t = 1; acceptance rate = 0; log-posterior value = 6.33745; theta = 0.1398 0.8825 2.2129
phi =
2.2396 0.6578
1.6332 2.9407
thetaInit =
0.2429
0.2159
2.6842
t = 1; acceptance rate = 0.5; log-posterior value = -5840.27; theta = 0.1095 0.4801 2.2394
t = 101; acceptance rate = 0.9; log-posterior value = -138.222; theta = 0.1350 0.7946 2.3796
t = 1; acceptance rate = 0.5; log-posterior value = -66.5889; theta = 0.1338 0.8789 2.3129
t = 101; acceptance rate = 0.89; log-posterior value = -151.623; theta = 0.1047 0.9135 2.2040
t = 1; acceptance rate = 0; log-posterior value = 6.08133; theta = 0.0819 0.8748 2.2950
t = 101; acceptance rate = 0.76; log-posterior value = -163.011; theta = 0.0835 0.9092 2.2261
t = 1; acceptance rate = 0.5; log-posterior value = -65.3067; theta = 0.1023 0.8947 2.1725
t = 101; acceptance rate = 0.94; log-posterior value = -144.052; theta = 0.0890 0.8687 2.2332
[1] 100.0000000 0.8600000 1.7805214 0.6459524 0.2784685
=== mile stone ===> processed 0% of MCMC iterations
=== mile stone ===> processed 10% of MCMC iterations
=== mile stone ===> processed 20% of MCMC iterations
=== mile stone ===> processed 30% of MCMC iterations
=== mile stone ===> processed 40% of MCMC iterations
=== mile stone ===> processed 50% of MCMC iterations
=== mile stone ===> processed 60% of MCMC iterations
=== mile stone ===> processed 70% of MCMC iterations
=== mile stone ===> processed 80% of MCMC iterations
=== mile stone ===> processed 90% of MCMC iterations
Parallel tempering finished:
Out of 10000 iterations, 482 swap is performed,
swap rate is 0.0482
Chain 1 acceptance rate = 0.9218
Chain 2 acceptance rate = 0.8993
Chain 3 acceptance rate = 0.8926
Chain 4 acceptance rate = 0.8739
Chain 5 acceptance rate = 0.8375
Chain 6 acceptance rate = 0.796
Chain 7 acceptance rate = 0.7265
Chain 8 acceptance rate = 0.5702
========================
Swap between chain 1 and chain 2:
total swap is 94, acceptance number = 69, acceptance rate = 0.734043
Swap between chain 2 and chain 3:
total swap is 53, acceptance number = 46, acceptance rate = 0.867925
Swap between chain 3 and chain 4:
total swap is 50, acceptance number = 36, acceptance rate = 0.72
Swap between chain 4 and chain 5:
total swap is 67, acceptance number = 47, acceptance rate = 0.701493
Swap between chain 5 and chain 6:
total swap is 58, acceptance number = 36, acceptance rate = 0.62069
Swap between chain 6 and chain 7:
total swap is 67, acceptance number = 34, acceptance rate = 0.507463
Swap between chain 7 and chain 8:
total swap is 93, acceptance number = 24, acceptance rate = 0.258065
=== mile stone ===> processed 0% of MCMC iterations
=== mile stone ===> processed 10% of MCMC iterations
=== mile stone ===> processed 20% of MCMC iterations
=== mile stone ===> processed 30% of MCMC iterations
=== mile stone ===> processed 40% of MCMC iterations
=== mile stone ===> processed 50% of MCMC iterations
=== mile stone ===> processed 60% of MCMC iterations
=== mile stone ===> processed 70% of MCMC iterations
=== mile stone ===> processed 80% of MCMC iterations
=== mile stone ===> processed 90% of MCMC iterations
Parallel tempering finished:
Out of 300 iterations, 162 swap is performed,
swap rate is 0.54
Chain 1 acceptance rate = 0
Chain 2 acceptance rate = 0
Chain 3 acceptance rate = 0
Chain 4 acceptance rate = 0
Chain 5 acceptance rate = 0.00666667
Chain 6 acceptance rate = 0.163333
Chain 7 acceptance rate = 0.5
Chain 8 acceptance rate = 0.583333
========================
Swap between chain 1 and chain 2:
total swap is 20, acceptance number = 20, acceptance rate = 1
Swap between chain 2 and chain 3:
total swap is 16, acceptance number = 16, acceptance rate = 1
Swap between chain 3 and chain 4:
total swap is 23, acceptance number = 23, acceptance rate = 1
Swap between chain 4 and chain 5:
total swap is 21, acceptance number = 21, acceptance rate = 1
Swap between chain 5 and chain 6:
total swap is 31, acceptance number = 20, acceptance rate = 0.645161
Swap between chain 6 and chain 7:
total swap is 19, acceptance number = 2, acceptance rate = 0.105263
Swap between chain 7 and chain 8:
total swap is 32, acceptance number = 9, acceptance rate = 0.28125
[1] 100.0000000 0.5900000 0.2021407 0.2153647 2.9716137
[1] 200.0000000 0.7600000 0.2062475 0.2423755 2.9471763
[1] 300.0000000 0.7400000 0.1926811 0.1871427 2.9527574
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (3)
• empty test (4)
• periodicMatern dCdphi is wrong for the 3rd parameter (1)
• periodicMatern magi:::phisigllik gradient has problem for eta, needs debug (1)
• periodicMatern phisigSample runs with error, needs debug (1)
• rationalQuadratic derivative variance Kmat too small (2)
• rbf derivative variance Kmat too small (2)
• segfault due to null pointer in hes1logmodel function, passing is wrong (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test_xthetaphillik.R:149:3): xthetaphisigmallik derivatives ────────
all(abs(x) < 0.005) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure (test_xthetaphillik.R:166:3): xthetaphisigmallik derivatives ────────
all(abs(x) < 0.005) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure (test_xthetaphillik.R:184:3): xthetaphisigmallik derivatives ────────
all(abs(x) < 0.005) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure (test_xthetaphillik.R:201:3): xthetaphisigmallik derivatives ────────
all(abs(x) < 0.005) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 4 | WARN 0 | SKIP 15 | PASS 457 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.0.0
Check: running tests for arch ‘i386’
Result: ERROR
Running 'testthat.R' [111s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> testthat::test_that("on attach messages", {
+ expect_message(library(magi))
+ })
Test passed
>
> test_check("magi")
t = 1; acceptance rate = 0; log-posterior value = 96.5295; theta = 0.2000 0.2000 3.0000
t = 101; acceptance rate = 0.68; log-posterior value = -111.076; theta = 0.1958 0.2256 2.9741
t = 1; acceptance rate = 0; log-posterior value = 96.5295; theta = 0.2000 0.2000 3.0000
t = 101; acceptance rate = 0.82; log-posterior value = -96.1765; theta = 0.2014 0.2393 2.9890
phi =
2.2396 0.6578
1.6332 2.9407
thetaInit =
0.2429
0.2159
2.6842
t = 1; acceptance rate = 0.5; log-posterior value = -5088.82; theta = 0.0914 0.5230 2.2903
phi =
2.2400 0.6500
1.6400 2.9300
thetaInit =
0.2431
0.2157
2.6789
t = 1; acceptance rate = 0.5; log-posterior value = -6268.13; theta = 0.0902 0.5183 2.2269
phi =
2.2396 0.6578
1.6332 2.9407
thetaInit =
0.2429
0.2159
2.6842
t = 1; acceptance rate = 0.5; log-posterior value = -5526.1; theta = 0.1196 0.4699 2.1851
t = 1; acceptance rate = 0; log-posterior value = 7.50032; theta = 0.1510 0.8508 2.2131
t = 1; acceptance rate = 0; log-posterior value = 7.14994; theta = 0.1462 0.8735 2.1585
t = 1; acceptance rate = 0; log-posterior value = 6.33745; theta = 0.1398 0.8825 2.2129
phi =
2.2396 0.6578
1.6332 2.9407
thetaInit =
0.2429
0.2159
2.6842
t = 1; acceptance rate = 0.5; log-posterior value = -5840.27; theta = 0.1095 0.4801 2.2394
t = 101; acceptance rate = 0.9; log-posterior value = -138.222; theta = 0.1350 0.7946 2.3796
t = 1; acceptance rate = 0.5; log-posterior value = -66.5889; theta = 0.1338 0.8789 2.3129
t = 101; acceptance rate = 0.89; log-posterior value = -151.623; theta = 0.1047 0.9135 2.2040
t = 1; acceptance rate = 0; log-posterior value = 6.08132; theta = 0.0819 0.8748 2.2950
t = 101; acceptance rate = 0.76; log-posterior value = -163.011; theta = 0.0835 0.9092 2.2261
t = 1; acceptance rate = 0.5; log-posterior value = -65.3067; theta = 0.1023 0.8947 2.1725
t = 101; acceptance rate = 0.94; log-posterior value = -144.052; theta = 0.0890 0.8687 2.2332
[1] 100.0000000 0.8600000 1.7805221 0.6459523 0.2784684
=== mile stone ===> processed 0% of MCMC iterations
=== mile stone ===> processed 10% of MCMC iterations
=== mile stone ===> processed 20% of MCMC iterations
=== mile stone ===> processed 30% of MCMC iterations
=== mile stone ===> processed 40% of MCMC iterations
=== mile stone ===> processed 50% of MCMC iterations
=== mile stone ===> processed 60% of MCMC iterations
=== mile stone ===> processed 70% of MCMC iterations
=== mile stone ===> processed 80% of MCMC iterations
=== mile stone ===> processed 90% of MCMC iterations
Parallel tempering finished:
Out of 10000 iterations, 482 swap is performed,
swap rate is 0.0482
Chain 1 acceptance rate = 0.92
Chain 2 acceptance rate = 0.8996
Chain 3 acceptance rate = 0.8941
Chain 4 acceptance rate = 0.8753
Chain 5 acceptance rate = 0.8367
Chain 6 acceptance rate = 0.7997
Chain 7 acceptance rate = 0.7283
Chain 8 acceptance rate = 0.572
========================
Swap between chain 1 and chain 2:
total swap is 94, acceptance number = 71, acceptance rate = 0.755319
Swap between chain 2 and chain 3:
total swap is 53, acceptance number = 45, acceptance rate = 0.849057
Swap between chain 3 and chain 4:
total swap is 50, acceptance number = 34, acceptance rate = 0.68
Swap between chain 4 and chain 5:
total swap is 67, acceptance number = 46, acceptance rate = 0.686567
Swap between chain 5 and chain 6:
total swap is 58, acceptance number = 34, acceptance rate = 0.586207
Swap between chain 6 and chain 7:
total swap is 67, acceptance number = 36, acceptance rate = 0.537313
Swap between chain 7 and chain 8:
total swap is 93, acceptance number = 26, acceptance rate = 0.27957
=== mile stone ===> processed 0% of MCMC iterations
=== mile stone ===> processed 10% of MCMC iterations
=== mile stone ===> processed 20% of MCMC iterations
=== mile stone ===> processed 30% of MCMC iterations
=== mile stone ===> processed 40% of MCMC iterations
=== mile stone ===> processed 50% of MCMC iterations
=== mile stone ===> processed 60% of MCMC iterations
=== mile stone ===> processed 70% of MCMC iterations
=== mile stone ===> processed 80% of MCMC iterations
=== mile stone ===> processed 90% of MCMC iterations
Parallel tempering finished:
Out of 300 iterations, 162 swap is performed,
swap rate is 0.54
Chain 1 acceptance rate = 0
Chain 2 acceptance rate = 0
Chain 3 acceptance rate = 0
Chain 4 acceptance rate = 0
Chain 5 acceptance rate = 0
Chain 6 acceptance rate = 0.26
Chain 7 acceptance rate = 0.57
Chain 8 acceptance rate = 0.626667
========================
Swap between chain 1 and chain 2:
total swap is 20, acceptance number = 20, acceptance rate = 1
Swap between chain 2 and chain 3:
total swap is 16, acceptance number = 16, acceptance rate = 1
Swap between chain 3 and chain 4:
total swap is 23, acceptance number = 23, acceptance rate = 1
Swap between chain 4 and chain 5:
total swap is 21, acceptance number = 21, acceptance rate = 1
Swap between chain 5 and chain 6:
total swap is 31, acceptance number = 12, acceptance rate = 0.387097
Swap between chain 6 and chain 7:
total swap is 19, acceptance number = 1, acceptance rate = 0.0526316
Swap between chain 7 and chain 8:
total swap is 32, acceptance number = 3, acceptance rate = 0.09375
[1] 100.0000000 0.7600000 0.1907167 0.2160267 2.8764746
[1] 200.0000000 0.7600000 0.1978097 0.2742148 2.9325236
[1] 300.0000000 0.7700000 0.1779350 0.2474248 2.9565845
== Skipped tests ===============================================================
* On CRAN (3)
* empty test (4)
* periodicMatern dCdphi is wrong for the 3rd parameter (1)
* periodicMatern magi:::phisigllik gradient has problem for eta, needs debug (1)
* periodicMatern phisigSample runs with error, needs debug (1)
* rationalQuadratic derivative variance Kmat too small (2)
* rbf derivative variance Kmat too small (2)
* segfault due to null pointer in hes1logmodel function, passing is wrong (1)
== Failed tests ================================================================
-- Failure (test_xthetaphi1sigmallik.R:141:3): xthetaphi1sigmallik compare to full xthetaphisigmallik --
out3$value - out0$value not equal to `constDiff12`.
1/1 mismatches
[1] 2.47e+192 - -27.1 == 2.47e+192
-- Failure (test_xthetaphillik.R:77:3): xthetaphisigmallik differs to xthetallik and loglikOrig by constant fixing phi sigma --
mean(realDiff < 0.001) is not strictly more than 0.95. Difference: -0.45
-- Failure (test_xthetaphillik.R:112:3): xthetaphisigmallik differs to loglikOrig by constant (the pi part) --
mean(abs(realDiff) < 0.01) is not strictly more than 0.4. Difference: -0.4
-- Failure (test_xthetaphillik.R:149:3): xthetaphisigmallik derivatives --------
all(abs(x) < 0.005) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Failure (test_xthetaphillik.R:166:3): xthetaphisigmallik derivatives --------
all(abs(x) < 0.005) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Failure (test_xthetaphillik.R:184:3): xthetaphisigmallik derivatives --------
all(abs(x) < 0.005) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Failure (test_xthetaphillik.R:201:3): xthetaphisigmallik derivatives --------
all(abs(x) < 0.005) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Failure (test_xthetaphillik.R:222:3): xthetaphisigmallik derivatives --------
all(abs(x) < 0.005) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 8 | WARN 0 | SKIP 15 | PASS 453 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64