Last updated on 2021-09-03 07:48:35 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.0 | 3.35 | 256.57 | 259.92 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.7.0 | ERROR | ||||
| r-devel-linux-x86_64-fedora-clang | 0.7.0 | 353.16 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.7.0 | 316.12 | ERROR | |||
| r-devel-windows-x86_64 | 0.7.0 | 6.00 | 350.00 | 356.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.7.0 | NOTE | ||||
| r-patched-linux-x86_64 | 0.7.0 | 3.18 | 248.62 | 251.80 | ERROR | |
| r-patched-solaris-x86 | 0.7.0 | 596.80 | ERROR | |||
| r-release-linux-x86_64 | 0.7.0 | 3.05 | 228.52 | 231.57 | ERROR | |
| r-release-macos-arm64 | 0.7.0 | ERROR | ||||
| r-release-macos-x86_64 | 0.7.0 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.7.0 | 8.00 | 242.00 | 250.00 | OK | |
| r-oldrel-macos-x86_64 | 0.7.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.7.0 | 7.00 | 343.00 | 350.00 | OK |
Version: 0.7.0
Check: tests
Result: ERROR
Running 'testthat.R' [204s/248s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
== Failed tests ================================================================
-- Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ---------------
Error: cannot open URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
Backtrace:
x
1. +-testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
3. | \-rlang::eval_bare(expr, quo_get_env(quo))
4. +-igraph::is.igraph(prep_biogrid())
5. | \-"igraph" %in% class(graph)
6. \-crosstalkr::prep_biogrid()
7. \-utils::download.file(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 60 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [168s/339s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
downloaded 38.9 MB
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ───────────────
Error: download from 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip' failed
Backtrace:
█
1. ├─testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─igraph::is.igraph(prep_biogrid())
5. │ └─"igraph" %in% class(graph)
6. └─crosstalkr::prep_biogrid()
7. └─utils::download.file(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 60 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.7.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: 'curl'
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [251s/336s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
downloaded 68.5 MB
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-compute_crosstalk.R:23:3): compute_crosstalk identifies crosstalkers for larger graphs ──
Error: Cholmod error 'X and/or Y have wrong dimensions' at file ../MatrixOps/cholmod_sdmult.c, line 88
Backtrace:
█
1. ├─testthat::expect_true(...) test-compute_crosstalk.R:23:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::is.data.frame(...)
5. └─crosstalkr::compute_crosstalk(...)
6. └─crosstalkr::sparseRWR(...)
7. ├─base::as.vector(w %*% pold)
8. ├─w %*% pold
9. └─w %*% pold
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 57 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [198s/311s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
downloaded 20.9 MB
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ───────────────
Error: download from 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip' failed
Backtrace:
█
1. ├─testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─igraph::is.igraph(prep_biogrid())
5. │ └─"igraph" %in% class(graph)
6. └─crosstalkr::prep_biogrid()
7. └─utils::download.file(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 60 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [8m/15m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-compute_crosstalk.R:23:3): compute_crosstalk identifies crosstalkers for larger graphs ──
Error: Cholmod error 'X and/or Y have wrong dimensions' at file ../MatrixOps/cholmod_sdmult.c, line 88
Backtrace:
█
1. ├─testthat::expect_true(...) test-compute_crosstalk.R:23:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::is.data.frame(...)
5. └─crosstalkr::compute_crosstalk(...)
6. └─crosstalkr::sparseRWR(...)
7. ├─base::as.vector(w %*% pold)
8. ├─w %*% pold
9. └─w %*% pold
── Error (test-ppi_ingest.R:4:3): prep_stringdb returns an igraph ──────────────
Error: At vector.pmt:444 : cannot reserve space for vector, Out of memory
Backtrace:
█
1. ├─testthat::expect_true(igraph::is.igraph(prep_stringdb())) test-ppi_ingest.R:4:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─igraph::is.igraph(prep_stringdb())
5. │ └─"igraph" %in% class(graph)
6. └─crosstalkr::prep_stringdb()
7. └─igraph::simplify(g, remove.multiple = TRUE, remove.loops = TRUE)
── Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ───────────────
Error: internet routines cannot be loaded
Backtrace:
█
1. ├─testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─igraph::is.igraph(prep_biogrid())
5. │ └─"igraph" %in% class(graph)
6. └─crosstalkr::prep_biogrid()
7. └─utils::download.file(...)
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 55 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [177s/281s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
downloaded 30.0 MB
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-compute_crosstalk.R:23:3): compute_crosstalk identifies crosstalkers for larger graphs ──
Error: Cholmod error 'X and/or Y have wrong dimensions' at file ../MatrixOps/cholmod_sdmult.c, line 88
Backtrace:
█
1. ├─testthat::expect_true(...) test-compute_crosstalk.R:23:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::is.data.frame(...)
5. └─crosstalkr::compute_crosstalk(...)
6. └─crosstalkr::sparseRWR(...)
7. ├─base::as.vector(w %*% pold)
8. ├─w %*% pold
9. └─w %*% pold
── Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ───────────────
Error: download from 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip' failed
Backtrace:
█
1. ├─testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─igraph::is.igraph(prep_biogrid())
5. │ └─"igraph" %in% class(graph)
6. └─crosstalkr::prep_biogrid()
7. └─utils::download.file(...)
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 56 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.7.0
Check: package dependencies
Result: ERROR
Packages required but not available: 'ensembldb', 'EnsDb.Hsapiens.v79'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 0.7.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘EnsDb.Hsapiens.v79’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64