Running ‘testthat.R’ [8m/15m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(crosstalkr)
  > 
  > test_check("crosstalkr")
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-compute_crosstalk.R:23:3): compute_crosstalk identifies crosstalkers for larger graphs ──
  Error: Cholmod error 'X and/or Y have wrong dimensions' at file ../MatrixOps/cholmod_sdmult.c, line 88
  Backtrace:
      █
   1. ├─testthat::expect_true(...) test-compute_crosstalk.R:23:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─base::is.data.frame(...)
   5. └─crosstalkr::compute_crosstalk(...)
   6.   └─crosstalkr::sparseRWR(...)
   7.     ├─base::as.vector(w %*% pold)
   8.     ├─w %*% pold
   9.     └─w %*% pold
  ── Error (test-ppi_ingest.R:4:3): prep_stringdb returns an igraph ──────────────
  Error: At vector.pmt:444 : cannot reserve space for vector, Out of memory
  Backtrace:
      █
   1. ├─testthat::expect_true(igraph::is.igraph(prep_stringdb())) test-ppi_ingest.R:4:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─igraph::is.igraph(prep_stringdb())
   5. │ └─"igraph" %in% class(graph)
   6. └─crosstalkr::prep_stringdb()
   7.   └─igraph::simplify(g, remove.multiple = TRUE, remove.loops = TRUE)
  ── Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ───────────────
  Error: internet routines cannot be loaded
  Backtrace:
      █
   1. ├─testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─igraph::is.igraph(prep_biogrid())
   5. │ └─"igraph" %in% class(graph)
   6. └─crosstalkr::prep_biogrid()
   7.   └─utils::download.file(...)
  
  [ FAIL 3 | WARN 2 | SKIP 0 | PASS 55 ]
  Error: Test failures
  Execution halted