Running 'testthat.R' [204s/248s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(crosstalkr)
  > 
  > test_check("crosstalkr")
  trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
  == Failed tests ================================================================
  -- Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ---------------
  Error: cannot open URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
  Backtrace:
      x
   1. +-testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
   2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
   3. |   \-rlang::eval_bare(expr, quo_get_env(quo))
   4. +-igraph::is.igraph(prep_biogrid())
   5. | \-"igraph" %in% class(graph)
   6. \-crosstalkr::prep_biogrid()
   7.   \-utils::download.file(...)
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 60 ]
  Error: Test failures
  Execution halted
Running ‘testthat.R’ [168s/339s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(crosstalkr)
  > 
  > test_check("crosstalkr")
  trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
  downloaded 38.9 MB
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ───────────────
  Error: download from 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip' failed
  Backtrace:
      █
   1. ├─testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─igraph::is.igraph(prep_biogrid())
   5. │ └─"igraph" %in% class(graph)
   6. └─crosstalkr::prep_biogrid()
   7.   └─utils::download.file(...)
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 60 ]
  Error: Test failures
  Execution halted
Namespace in Imports field not imported from: 'curl'
  All declared Imports should be used.
Namespace in Imports field not imported from: 'curl'
  All declared Imports should be used.
Running ‘testthat.R’ [251s/336s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(crosstalkr)
  > 
  > test_check("crosstalkr")
  trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
  downloaded 68.5 MB
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-compute_crosstalk.R:23:3): compute_crosstalk identifies crosstalkers for larger graphs ──
  Error: Cholmod error 'X and/or Y have wrong dimensions' at file ../MatrixOps/cholmod_sdmult.c, line 88
  Backtrace:
      █
   1. ├─testthat::expect_true(...) test-compute_crosstalk.R:23:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─base::is.data.frame(...)
   5. └─crosstalkr::compute_crosstalk(...)
   6.   └─crosstalkr::sparseRWR(...)
   7.     ├─base::as.vector(w %*% pold)
   8.     ├─w %*% pold
   9.     └─w %*% pold
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 57 ]
  Error: Test failures
  Execution halted
Namespace in Imports field not imported from: 'curl'
  All declared Imports should be used.
Running ‘testthat.R’ [198s/311s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(crosstalkr)
  > 
  > test_check("crosstalkr")
  trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
  downloaded 20.9 MB
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ───────────────
  Error: download from 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip' failed
  Backtrace:
      █
   1. ├─testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─igraph::is.igraph(prep_biogrid())
   5. │ └─"igraph" %in% class(graph)
   6. └─crosstalkr::prep_biogrid()
   7.   └─utils::download.file(...)
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 60 ]
  Error: Test failures
  Execution halted
Namespace in Imports field not imported from: 'curl'
  All declared Imports should be used.
Running ‘testthat.R’ [177s/281s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(crosstalkr)
  > 
  > test_check("crosstalkr")
  trying URL 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip'
  downloaded 30.0 MB
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-compute_crosstalk.R:23:3): compute_crosstalk identifies crosstalkers for larger graphs ──
  Error: Cholmod error 'X and/or Y have wrong dimensions' at file ../MatrixOps/cholmod_sdmult.c, line 88
  Backtrace:
      █
   1. ├─testthat::expect_true(...) test-compute_crosstalk.R:23:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─base::is.data.frame(...)
   5. └─crosstalkr::compute_crosstalk(...)
   6.   └─crosstalkr::sparseRWR(...)
   7.     ├─base::as.vector(w %*% pold)
   8.     ├─w %*% pold
   9.     └─w %*% pold
  ── Error (test-ppi_ingest.R:8:3): prep_biogrid returns an igraph ───────────────
  Error: download from 'https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-3.5.171/BIOGRID-ORGANISM-3.5.171.tab2.zip' failed
  Backtrace:
      █
   1. ├─testthat::expect_true(igraph::is.igraph(prep_biogrid())) test-ppi_ingest.R:8:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─igraph::is.igraph(prep_biogrid())
   5. │ └─"igraph" %in% class(graph)
   6. └─crosstalkr::prep_biogrid()
   7.   └─utils::download.file(...)
  
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 56 ]
  Error: Test failures
  Execution halted
Packages required but not available: 'ensembldb', 'EnsDb.Hsapiens.v79'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘EnsDb.Hsapiens.v79’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘EnsDb.Hsapiens.v79’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.