Last updated on 2021-09-12 11:49:57 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.9 | 33.88 | 227.86 | 261.74 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.6.9 | 23.34 | 165.90 | 189.24 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.6.9 | 321.45 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.6.9 | 328.46 | OK | |||
| r-devel-windows-x86_64 | 0.6.9 | 47.00 | 288.00 | 335.00 | WARN | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.6.9 | OK | ||||
| r-patched-linux-x86_64 | 0.6.9 | 31.93 | 223.18 | 255.11 | OK | |
| r-patched-solaris-x86 | 0.6.9 | 512.30 | OK | |||
| r-release-linux-x86_64 | 0.6.9 | 25.15 | 225.33 | 250.48 | OK | |
| r-release-macos-arm64 | 0.6.9 | NOTE | ||||
| r-release-macos-x86_64 | 0.6.9 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.6.9 | 48.00 | 8.00 | 56.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.6.9 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.6.9 | 65.00 | 507.00 | 572.00 | OK |
Version: 0.6.9
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'introduction_to_dnapath.Rmd' using rmarkdown
Quitting from lines 214-217 (introduction_to_dnapath.Rmd)
Error: processing vignette 'introduction_to_dnapath.Rmd' failed with diagnostics:
You must provide a valid Mart object. To create a Mart object use the function: useMart. Check ?useMart for more information.
--- failed re-building 'introduction_to_dnapath.Rmd'
--- re-building 'package_data.Rmd' using rmarkdown
Rows: 14 Columns: 88
-- Column specification --------------------------------------------------------
Delimiter: "\t"
chr (88): attrib_name, TCGA.3H.AB3O, TCGA.3H.AB3S, TCGA.3U.A98E, TCGA.3U.A98...
i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Rows: 19581 Columns: 88
-- Column specification --------------------------------------------------------
Delimiter: "\t"
chr (1): attrib_name
dbl (87): TCGA.3H.AB3K, TCGA.3H.AB3L, TCGA.3H.AB3M, TCGA.3H.AB3O, TCGA.3H.AB...
i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Quitting from lines 234-239 (package_data.Rmd)
Error: processing vignette 'package_data.Rmd' failed with diagnostics:
You must provide a valid Mart object. To create a Mart object use the function: useMart. Check ?useMart for more information.
--- failed re-building 'package_data.Rmd'
SUMMARY: processing the following files failed:
'introduction_to_dnapath.Rmd' 'package_data.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.6.9
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'GENIE3', 'minet', 'reactome.db', 'biomaRt'
Flavor: r-release-macos-arm64
Version: 0.6.9
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘minet’, ‘GENIE3’
Flavor: r-release-macos-arm64
Version: 0.6.9
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'GENIE3', 'reactome.db'
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.6.9
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘GENIE3’
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.6.9
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-release-windows-ix86+x86_64