Last updated on 2021-09-18 10:52:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1 | 50.55 | 544.77 | 595.32 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1 | 44.11 | 406.83 | 450.94 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1 | 719.69 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1 | 716.95 | NOTE | |||
| r-devel-windows-x86_64 | 0.1 | 64.00 | 608.00 | 672.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.1 | NOTE | ||||
| r-patched-linux-x86_64 | 0.1 | 52.80 | 572.87 | 625.67 | OK | |
| r-patched-solaris-x86 | 0.1 | 704.90 | NOTE | |||
| r-release-linux-x86_64 | 0.1 | 48.21 | 570.51 | 618.72 | OK | |
| r-release-macos-arm64 | 0.1 | NOTE | ||||
| r-release-macos-x86_64 | 0.1 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.1 | 121.00 | 482.00 | 603.00 | WARN |
Version: 0.1
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘TCGAbiolinks’ ‘gdata’ ‘genefilter’ ‘maftools’ ‘readxl’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64
Version: 0.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘calcPhenotype.Rmd’ using rmarkdown
Warning in in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, :
You changed the working directory to /tmp/RtmpYv6J9y/working_dir/RtmpCKntJc (probably via setwd()). It will be restored to /data/gannet/ripley/R/packages/tests-clang/oncoPredict.Rcheck/vign_test/oncoPredict/vignettes. See the Note section in ?knitr::knit
--- finished re-building ‘calcPhenotype.Rmd’
--- re-building ‘cnv.Rmd’ using rmarkdown
Warning in in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, :
You changed the working directory to /tmp/RtmpYv6J9y/working_dir/RtmpCKntJc (probably via setwd()). It will be restored to /data/gannet/ripley/R/packages/tests-clang/oncoPredict.Rcheck/vign_test/oncoPredict/vignettes. See the Note section in ?knitr::knit
--- finished re-building ‘cnv.Rmd’
--- re-building ‘glds.Rmd’ using rmarkdown
Warning in in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, :
You changed the working directory to /tmp/RtmpYv6J9y/working_dir/RtmpCKntJc (probably via setwd()). It will be restored to /data/gannet/ripley/R/packages/tests-clang/oncoPredict.Rcheck/vign_test/oncoPredict/vignettes. See the Note section in ?knitr::knit
--- finished re-building ‘glds.Rmd’
--- re-building ‘mut.Rmd’ using rmarkdown
Quitting from lines 18-58 (mut.Rmd)
Error: processing vignette 'mut.Rmd' failed with diagnostics:
GDC server down, try to use this package later
--- failed re-building ‘mut.Rmd’
SUMMARY: processing the following file failed:
‘mut.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1
Check: package dependencies
Result: ERROR
Packages required but not available:
'org.Hs.eg.db', 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'maftools',
'TCGAbiolinks'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-x86_64
Version: 0.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'calcPhenotype.Rmd' using rmarkdown
Warning in in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, :
You changed the working directory to D:/temp/Rtmpq0tgQ1 (probably via setwd()). It will be restored to d:/RCompile/CRANpkg/local/4.1/oncoPredict.Rcheck/vign_test/oncoPredict/vignettes. See the Note section in ?knitr::knit
--- finished re-building 'calcPhenotype.Rmd'
--- re-building 'cnv.Rmd' using rmarkdown
Warning in in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, :
You changed the working directory to D:/temp/RtmpQVJw1p (probably via setwd()). It will be restored to d:/RCompile/CRANpkg/local/4.1/oncoPredict.Rcheck/vign_test/oncoPredict/vignettes. See the Note section in ?knitr::knit
--- finished re-building 'cnv.Rmd'
--- re-building 'glds.Rmd' using rmarkdown
Warning in in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, :
You changed the working directory to D:/temp/Rtmp8GFvH9 (probably via setwd()). It will be restored to d:/RCompile/CRANpkg/local/4.1/oncoPredict.Rcheck/vign_test/oncoPredict/vignettes. See the Note section in ?knitr::knit
--- finished re-building 'glds.Rmd'
--- re-building 'mut.Rmd' using rmarkdown
Quitting from lines 18-58 (mut.Rmd)
Error: processing vignette 'mut.Rmd' failed with diagnostics:
GDC server down, try to use this package later
--- failed re-building 'mut.Rmd'
SUMMARY: processing the following file failed:
'mut.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-ix86+x86_64