CRAN Package Check Results for Package RefFreeEWAS

Last updated on 2021-09-19 08:50:38 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2 3.50 55.98 59.48 OK
r-devel-linux-x86_64-debian-gcc 2.2 2.58 43.20 45.78 OK
r-devel-linux-x86_64-fedora-clang 2.2 79.42 OK
r-devel-linux-x86_64-fedora-gcc 2.2 68.49 OK
r-devel-windows-x86_64 2.2 6.00 80.00 86.00 OK
r-devel-windows-x86_64-gcc10-UCRT 2.2 ERROR
r-patched-linux-x86_64 2.2 3.93 54.56 58.49 OK
r-patched-solaris-x86 2.2 120.80 OK
r-release-linux-x86_64 2.2 3.11 54.36 57.47 OK
r-release-macos-arm64 2.2 ERROR
r-release-macos-x86_64 2.2 OK
r-release-windows-ix86+x86_64 2.2 7.00 74.00 81.00 OK
r-oldrel-macos-x86_64 2.2 OK
r-oldrel-windows-ix86+x86_64 2.2 6.00 74.00 80.00 OK

Additional issues

M1mac

Check Details

Version: 2.2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     WARNING: installation-time patches will not be applied, could not get the patches index
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 2.2
Check: PDF version of manual
Result: WARN
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 2.2
Check: PDF version of manual without hyperrefs or index
Result: ERROR
    Re-running with no redirection of stdout/stderr.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 2.2
Check: examples
Result: ERROR
    Running examples in ‘RefFreeEWAS-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: RefFreeCellMixInitializeBySVD
    > ### Title: Initialize Reference-Free Cell Mixture Projection by SVD
    > ### Aliases: RefFreeCellMixInitializeBySVD
    >
    > ### ** Examples
    >
    > data(HNSCC)
    > Y.shortTest <- Y.HNSCC.averageBetas[1:500,]
    > mu.start.svd <- RefFreeCellMixInitializeBySVD(Y.shortTest)
    > testArray2 <- RefFreeCellMixArrayWithCustomStart(Y.shortTest, mu.start=mu.start.svd,
    + Klist=1:3,iters=5)
    Fitting K = 1
    Fitting K = 2
    Error in solve.QP(Dmat, t(Xmat[obs, ]) %*% Y[obs, i], Amat, b0vec) :
     constraints are inconsistent, no solution!
    Calls: RefFreeCellMixArrayWithCustomStart -> RefFreeCellMix -> projectMix -> solve.QP
    Execution halted
Flavor: r-release-macos-arm64