Last updated on 2021-10-22 07:51:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.13.1 | 7.28 | 358.51 | 365.79 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.13.1 | 5.41 | 255.41 | 260.82 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.13.1 | 678.22 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.13.1 | 539.11 | OK | |||
| r-devel-windows-x86_64 | 0.13.1 | 11.00 | 180.00 | 191.00 | OK | --no-vignettes |
| r-devel-windows-x86_64-gcc10-UCRT | 0.13.1 | OK | ||||
| r-patched-linux-x86_64 | 0.13.1 | 11.44 | 411.83 | 423.27 | ERROR | |
| r-patched-solaris-x86 | 0.13.1 | 746.50 | OK | --no-build-vignettes | ||
| r-release-linux-x86_64 | 0.13.1 | 6.55 | 344.33 | 350.88 | ERROR | |
| r-release-macos-arm64 | 0.13.1 | OK | ||||
| r-release-macos-x86_64 | 0.13.1 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.13.1 | 14.00 | 214.00 | 228.00 | OK | --no-vignettes |
| r-oldrel-macos-x86_64 | 0.13.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.13.1 | 14.00 | 195.00 | 209.00 | OK | --no-vignettes |
Version: 0.13.1
Check: tests
Result: ERROR
Running 'compute.animation_tests.R' [4s/5s]
Running 'd3_animation_tests.R' [6s/7s]
Running 'effects_tests.R' [9s/10s]
Running 'filmstrip_tests.R' [4s/4s]
Running 'layout_tests.R' [3s/4s]
Running 'networkAnimationTest.R' [2s/3s]
Running 'proximity.timeline_test.R' [4s/5s]
Running 'render.animation_test.R' [10s/12s]
Running 'timePrisimTest.R' [3s/4s]
Running 'timeline_test.R' [11s/12s]
Running 'transmissionTimelineTests.R' [3s/3s]
Running 'weighttest.R' [12s/15s]
Running 'writeFormatTests.R' [1s/2s]
Running the tests in 'tests/proximity.timeline_test.R' failed.
Complete output:
> # some tests tfor the proximity.timeline function
> require(ndtv)
Loading required package: ndtv
Loading required package: network
'network' 1.17.1 (2021-06-12), part of the Statnet Project
* 'news(package="network")' for changes since last version
* 'citation("network")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: networkDynamic
'networkDynamic' 0.11.0 (2021-06-12), part of the Statnet Project
* 'news(package="networkDynamic")' for changes since last version
* 'citation("networkDynamic")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: animation
Loading required package: sna
Loading required package: statnet.common
Attaching package: 'statnet.common'
The following objects are masked from 'package:base':
attr, order
sna: Tools for Social Network Analysis
Version 2.6 created on 2020-10-5.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
For citation information, type citation("sna").
Type help(package="sna") to get started.
'ndtv' 0.13.1 (2021-07-29), part of the Statnet Project
* 'news(package="ndtv")' for changes since last version
* 'citation("ndtv")' for citation information
* 'https://statnet.org' for help, support, and other information
> require(testthat)
Loading required package: testthat
>
> test<-network.initialize(10)
> add.edges.active(test,head=1:9,tail=2:10,onset=0,terminus=10)
> add.edges.active(test,head=1,tail=3,onset=1,terminus=2)
> proximity.timeline(test)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
rendering splines for each vertex ...
>
> data(McFarland_cls33_10_16_96)
> proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),vertex.cex=(cls33_10_16_96%v%'type'=='instructor')*4+1,labels.at=45)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
computing positions for slice 5
computing positions for slice 6
computing positions for slice 7
computing positions for slice 8
computing positions for slice 9
computing positions for slice 10
rendering splines for each vertex ...
>
> # test algorithm types
> test_that("algorithms work",{
+ # isoMDS is default, so already tested
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='sammon')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='cmdscale')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='gvNeato')
+ # only check MDSJ if allready installed (and not on CRAN)
+ skip_on_cran()
+ has.mdsj<-ndtv:::check.mdsj(ask=FALSE)
+ if(!is.null(has.mdsj)){
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='MDSJ')
+ }
+
+ })
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Warning (???): algorithms work ----------------------------------------------
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
-- Warning (???): algorithms work ----------------------------------------------
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
-- Error (???): algorithms work ------------------------------------------------
Error in `install.mdsj(mdsj.dir)`: Unable to install MDSJ because the package path /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ndtv/java/does not appear to have write permissions
Backtrace:
1. ndtv:::check.mdsj(ask = FALSE)
2. ndtv:::install.mdsj(mdsj.dir)
Error: Test failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.13.1
Check: tests
Result: ERROR
Running ‘compute.animation_tests.R’ [3s/4s]
Running ‘d3_animation_tests.R’ [5s/7s]
Running ‘effects_tests.R’ [6s/9s]
Running ‘filmstrip_tests.R’ [3s/4s]
Running ‘layout_tests.R’ [2s/3s]
Running ‘networkAnimationTest.R’ [2s/3s]
Running ‘proximity.timeline_test.R’ [2s/4s]
Running ‘render.animation_test.R’ [8s/11s]
Running ‘timePrisimTest.R’ [2s/3s]
Running ‘timeline_test.R’ [7s/11s]
Running ‘transmissionTimelineTests.R’ [2s/3s]
Running ‘weighttest.R’ [9s/17s]
Running ‘writeFormatTests.R’ [1s/1s]
Running the tests in ‘tests/proximity.timeline_test.R’ failed.
Complete output:
> # some tests tfor the proximity.timeline function
> require(ndtv)
Loading required package: ndtv
Loading required package: network
'network' 1.17.1 (2021-06-12), part of the Statnet Project
* 'news(package="network")' for changes since last version
* 'citation("network")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: networkDynamic
'networkDynamic' 0.11.0 (2021-06-12), part of the Statnet Project
* 'news(package="networkDynamic")' for changes since last version
* 'citation("networkDynamic")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: animation
Loading required package: sna
Loading required package: statnet.common
Attaching package: 'statnet.common'
The following objects are masked from 'package:base':
attr, order
sna: Tools for Social Network Analysis
Version 2.6 created on 2020-10-5.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
For citation information, type citation("sna").
Type help(package="sna") to get started.
'ndtv' 0.13.1 (2021-07-29), part of the Statnet Project
* 'news(package="ndtv")' for changes since last version
* 'citation("ndtv")' for citation information
* 'https://statnet.org' for help, support, and other information
> require(testthat)
Loading required package: testthat
>
> test<-network.initialize(10)
> add.edges.active(test,head=1:9,tail=2:10,onset=0,terminus=10)
> add.edges.active(test,head=1,tail=3,onset=1,terminus=2)
> proximity.timeline(test)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
rendering splines for each vertex ...
>
> data(McFarland_cls33_10_16_96)
> proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),vertex.cex=(cls33_10_16_96%v%'type'=='instructor')*4+1,labels.at=45)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
computing positions for slice 5
computing positions for slice 6
computing positions for slice 7
computing positions for slice 8
computing positions for slice 9
computing positions for slice 10
rendering splines for each vertex ...
>
> # test algorithm types
> test_that("algorithms work",{
+ # isoMDS is default, so already tested
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='sammon')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='cmdscale')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='gvNeato')
+ # only check MDSJ if allready installed (and not on CRAN)
+ skip_on_cran()
+ has.mdsj<-ndtv:::check.mdsj(ask=FALSE)
+ if(!is.null(has.mdsj)){
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='MDSJ')
+ }
+
+ })
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Error (???): algorithms work ────────────────────────────────────────────────
Error in `install.mdsj(mdsj.dir)`: Unable to install MDSJ because the package path /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ndtv/java/does not appear to have write permissions
Backtrace:
1. ndtv:::check.mdsj(ask = FALSE)
2. ndtv:::install.mdsj(mdsj.dir)
Error: Test failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.13.1
Check: tests
Result: ERROR
Running ‘compute.animation_tests.R’ [3s/4s]
Running ‘d3_animation_tests.R’ [6s/6s]
Running ‘effects_tests.R’ [9s/10s]
Running ‘filmstrip_tests.R’ [3s/4s]
Running ‘layout_tests.R’ [2s/3s]
Running ‘networkAnimationTest.R’ [2s/3s]
Running ‘proximity.timeline_test.R’ [3s/4s]
Running ‘render.animation_test.R’ [10s/12s]
Running ‘timePrisimTest.R’ [3s/3s]
Running ‘timeline_test.R’ [10s/11s]
Running ‘transmissionTimelineTests.R’ [2s/3s]
Running ‘weighttest.R’ [11s/15s]
Running ‘writeFormatTests.R’ [1s/1s]
Running the tests in ‘tests/proximity.timeline_test.R’ failed.
Complete output:
> # some tests tfor the proximity.timeline function
> require(ndtv)
Loading required package: ndtv
Loading required package: network
'network' 1.17.1 (2021-06-12), part of the Statnet Project
* 'news(package="network")' for changes since last version
* 'citation("network")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: networkDynamic
'networkDynamic' 0.11.0 (2021-06-12), part of the Statnet Project
* 'news(package="networkDynamic")' for changes since last version
* 'citation("networkDynamic")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: animation
Loading required package: sna
Loading required package: statnet.common
Attaching package: 'statnet.common'
The following objects are masked from 'package:base':
attr, order
sna: Tools for Social Network Analysis
Version 2.6 created on 2020-10-5.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
For citation information, type citation("sna").
Type help(package="sna") to get started.
'ndtv' 0.13.1 (2021-07-29), part of the Statnet Project
* 'news(package="ndtv")' for changes since last version
* 'citation("ndtv")' for citation information
* 'https://statnet.org' for help, support, and other information
> require(testthat)
Loading required package: testthat
>
> test<-network.initialize(10)
> add.edges.active(test,head=1:9,tail=2:10,onset=0,terminus=10)
> add.edges.active(test,head=1,tail=3,onset=1,terminus=2)
> proximity.timeline(test)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
rendering splines for each vertex ...
>
> data(McFarland_cls33_10_16_96)
> proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),vertex.cex=(cls33_10_16_96%v%'type'=='instructor')*4+1,labels.at=45)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
computing positions for slice 5
computing positions for slice 6
computing positions for slice 7
computing positions for slice 8
computing positions for slice 9
computing positions for slice 10
rendering splines for each vertex ...
>
> # test algorithm types
> test_that("algorithms work",{
+ # isoMDS is default, so already tested
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='sammon')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='cmdscale')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='gvNeato')
+ # only check MDSJ if allready installed (and not on CRAN)
+ skip_on_cran()
+ has.mdsj<-ndtv:::check.mdsj(ask=FALSE)
+ if(!is.null(has.mdsj)){
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='MDSJ')
+ }
+
+ })
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Error (???): algorithms work ────────────────────────────────────────────────
Error in `install.mdsj(mdsj.dir)`: Unable to install MDSJ because the package path /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ndtv/java/does not appear to have write permissions
Backtrace:
1. ndtv:::check.mdsj(ask = FALSE)
2. ndtv:::install.mdsj(mdsj.dir)
Error: Test failed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.13.1
Check: tests
Result: ERROR
Running ‘compute.animation_tests.R’ [3s/4s]
Running ‘d3_animation_tests.R’ [6s/6s]
Running ‘effects_tests.R’ [8s/10s]
Running ‘filmstrip_tests.R’ [3s/4s]
Running ‘layout_tests.R’ [2s/3s]
Running ‘networkAnimationTest.R’ [2s/3s]
Running ‘proximity.timeline_test.R’ [3s/5s]
Running ‘render.animation_test.R’ [10s/12s]
Running ‘timePrisimTest.R’ [3s/3s]
Running ‘timeline_test.R’ [10s/11s]
Running ‘transmissionTimelineTests.R’ [2s/3s]
Running ‘weighttest.R’ [11s/15s]
Running ‘writeFormatTests.R’ [1s/1s]
Running the tests in ‘tests/proximity.timeline_test.R’ failed.
Complete output:
> # some tests tfor the proximity.timeline function
> require(ndtv)
Loading required package: ndtv
Loading required package: network
'network' 1.17.1 (2021-06-12), part of the Statnet Project
* 'news(package="network")' for changes since last version
* 'citation("network")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: networkDynamic
'networkDynamic' 0.11.0 (2021-06-12), part of the Statnet Project
* 'news(package="networkDynamic")' for changes since last version
* 'citation("networkDynamic")' for citation information
* 'https://statnet.org' for help, support, and other information
Loading required package: animation
Loading required package: sna
Loading required package: statnet.common
Attaching package: 'statnet.common'
The following objects are masked from 'package:base':
attr, order
sna: Tools for Social Network Analysis
Version 2.6 created on 2020-10-5.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
For citation information, type citation("sna").
Type help(package="sna") to get started.
'ndtv' 0.13.1 (2021-07-29), part of the Statnet Project
* 'news(package="ndtv")' for changes since last version
* 'citation("ndtv")' for citation information
* 'https://statnet.org' for help, support, and other information
> require(testthat)
Loading required package: testthat
>
> test<-network.initialize(10)
> add.edges.active(test,head=1:9,tail=2:10,onset=0,terminus=10)
> add.edges.active(test,head=1,tail=3,onset=1,terminus=2)
> proximity.timeline(test)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
rendering splines for each vertex ...
>
> data(McFarland_cls33_10_16_96)
> proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),vertex.cex=(cls33_10_16_96%v%'type'=='instructor')*4+1,labels.at=45)
collapsing slice networks ...
computing vertex positions using 1D isoMDS layout ...
computing positions for slice 1
computing positions for slice 2
computing positions for slice 3
computing positions for slice 4
computing positions for slice 5
computing positions for slice 6
computing positions for slice 7
computing positions for slice 8
computing positions for slice 9
computing positions for slice 10
rendering splines for each vertex ...
>
> # test algorithm types
> test_that("algorithms work",{
+ # isoMDS is default, so already tested
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='sammon')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='cmdscale')
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='gvNeato')
+ # only check MDSJ if allready installed (and not on CRAN)
+ skip_on_cran()
+ has.mdsj<-ndtv:::check.mdsj(ask=FALSE)
+ if(!is.null(has.mdsj)){
+ proximity.timeline(cls33_10_16_96,onsets=seq(0,45,5),termini=seq(2.5,47.5,5),mode='MDSJ')
+ }
+
+ })
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Warning (???): algorithms work ──────────────────────────────────────────────
The Graphviz neato utility does not appear to be installed on this system. See ?install.graphviz for more information
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
3. ndtv:::check.graphviz()
── Warning (???): algorithms work ──────────────────────────────────────────────
Unable to locate the Graphviz library, using KamadaKawai layout instead
Backtrace:
1. ndtv::proximity.timeline(...)
2. ndtv::network.layout.animate.Graphviz(...)
── Error (???): algorithms work ────────────────────────────────────────────────
Error in `install.mdsj(mdsj.dir)`: Unable to install MDSJ because the package path /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/ndtv/java/does not appear to have write permissions
Backtrace:
1. ndtv:::check.mdsj(ask = FALSE)
2. ndtv:::install.mdsj(mdsj.dir)
Error: Test failed
Execution halted
Flavor: r-release-linux-x86_64